M
Miriam Land
Researcher at Oak Ridge National Laboratory
Publications - 324
Citations - 26412
Miriam Land is an academic researcher from Oak Ridge National Laboratory. The author has contributed to research in topics: Genome & Whole genome sequencing. The author has an hindex of 61, co-authored 322 publications receiving 22582 citations. Previous affiliations of Miriam Land include Joint Genome Institute & Lawrence Livermore National Laboratory.
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Journal ArticleDOI
Prodigal: prokaryotic gene recognition and translation initiation site identification
Doug Hyatt,Doug Hyatt,Gwo Liang Chen,Philip F. LoCascio,Miriam Land,Frank W. Larimer,Frank W. Larimer,Loren Hauser +7 more
TL;DR: This work developed a new gene prediction algorithm called Prodigal (PROkaryotic DYnamic programming Gene-finding ALgorithm), which achieved good results compared to existing methods, and it is believed it will be a valuable asset to automated microbial annotation pipelines.
Journal ArticleDOI
Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation
Gabrielle Rocap,Frank W. Larimer,Frank W. Larimer,Jane Lamerdin,Stephanie Malfatti,Patrick S. G. Chain,Patrick S. G. Chain,Nathan A. Ahlgren,Andrae Arellano,Maureen L. Coleman,Loren Hauser,Loren Hauser,Wolfgang R. Hess,Zackary I. Johnson,Miriam Land,Miriam Land,Debbie Lindell,Anton F. Post,Warren Regala,Manesh Shah,Manesh Shah,Stephanie L. Shaw,Claudia Steglich,Matthew B. Sullivan,Claire S. Ting,Andrew C. Tolonen,Eric A. Webb,Erik R. Zinser,Sallie W. Chisholm +28 more
TL;DR: The genomes of two Prochlorococcus strains that span the largest evolutionary distance within the Pro chlorococcus lineage are compared and reveal dynamic genomes that are constantly changing in response to myriad selection pressures.
Journal ArticleDOI
KBase: The United States Department of Energy Systems Biology Knowledgebase.
Adam P. Arkin,Adam P. Arkin,Robert W. Cottingham,Christopher S. Henry,Nomi L. Harris,Rick Stevens,Sergei Maslov,Paramvir S. Dehal,Doreen Ware,Fernando Perez,Shane Canon,Michael W. Sneddon,Matthew L. Henderson,William J. Riehl,Dan Murphy-Olson,Stephen Y. Chan,Roy T. Kamimura,Sunita Kumari,Meghan M Drake,Thomas Brettin,Elizabeth M. Glass,Dylan Chivian,Dan Gunter,David J. Weston,Benjamin H. Allen,Jason K. Baumohl,Aaron A. Best,Benjamin P. Bowen,Steven E. Brenner,Christopher Bun,John-Marc Chandonia,Jer Ming Chia,R. L. Colasanti,Neal Conrad,James J. Davis,Brian H. Davison,Matthew DeJongh,Scott Devoid,Emily M. Dietrich,Inna Dubchak,Janaka N. Edirisinghe,Janaka N. Edirisinghe,Gang Fang,José P. Faria,Paul M. Frybarger,Wolfgang Gerlach,Mark Gerstein,Annette Greiner,James Gurtowski,Holly L. Haun,Fei He,Rashmi Jain,Rashmi Jain,Marcin P. Joachimiak,Kevin P. Keegan,Shinnosuke Kondo,Vivek Kumar,Miriam Land,Folker Meyer,Mark Mills,Pavel S. Novichkov,Taeyun Oh,Taeyun Oh,Gary J. Olsen,Robert Olson,Bruce Parrello,Shiran Pasternak,Erik Pearson,Sarah S. Poon,Gavin Price,Srividya Ramakrishnan,Priya Ranjan,Priya Ranjan,Pamela C. Ronald,Pamela C. Ronald,Michael C. Schatz,Samuel M. D. Seaver,Maulik Shukla,Roman A. Sutormin,Mustafa H Syed,James Thomason,Nathan L. Tintle,Daifeng Wang,Fangfang Xia,Hyunseung Yoo,Shinjae Yoo,Dantong Yu +86 more
TL;DR: Author(s): Arkin, Adam P; Cottingham, Robert W; Henry, Christopher S; Harris, Nomi L; Stevens, Rick L; Maslov, Sergei; Dehal, Paramvir; Ware, Doreen; Perez, Fernando; Canon, Shane; Sneddon, Michael W; Henderson, Matthew L; Riehl, William J; Murphy-Olson, Dan; Chan, Stephen Y; Kamimura, Roy T.
Journal ArticleDOI
Complete genome sequence of the metabolically versatile photosynthetic bacterium Rhodopseudomonas palustris
Frank W. Larimer,Patrick S. G. Chain,Patrick S. G. Chain,Loren Hauser,Loren Hauser,Jane Lamerdin,Stephanie Malfatti,Stephanie Malfatti,Long Do,Miriam Land,Miriam Land,Dale A. Pelletier,Dale A. Pelletier,Thomas Beatty,Andrew S. Lang,F. Robert Tabita,Janet L. Gibson,Thomas E. Hanson,Cedric E. Bobst,Janelle L. Torres Y. Torres,Caroline M. Peres,Faith H. Harrison,Jane Gibson,Caroline S. Harwood +23 more
TL;DR: The genome sequence of R. palustris is described, which reveals genes that confer a remarkably large number of options within a given type of metabolism, including three nitrogenases, five benzene ring cleavage pathways and four light harvesting 2 systems.
Journal ArticleDOI
The genome of a motile marine Synechococcus
Brian Palenik,B. Brahamsha,Frank W. Larimer,Frank W. Larimer,Miriam Land,Miriam Land,Loren Hauser,Loren Hauser,Patrick S. G. Chain,Patrick S. G. Chain,Jane Lamerdin,Jane Lamerdin,Warren Regala,Warren Regala,Eric E. Allen,Eric E. Allen,Jay McCarren,Ian T. Paulsen,Alexis Dufresne,Frédéric Partensky,Eric A. Webb,John B. Waterbury +21 more
TL;DR: The genome of WH8102 seems to have been greatly influenced by horizontal gene transfer, partially through phages, and is more of a generalist than two related marine cyanobacteria.