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Chun-Chi Liu
Researcher at National Chung Hsing University
Publications - 41
Citations - 4421
Chun-Chi Liu is an academic researcher from National Chung Hsing University. The author has contributed to research in topics: Gene & Gene expression profiling. The author has an hindex of 18, co-authored 38 publications receiving 3624 citations. Previous affiliations of Chun-Chi Liu include University of Southern California.
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miRTarBase 2016: updates to the experimentally validated miRNA-target interactions database
Chih Hung Chou,Nai-Wen Chang,Sirjana Shrestha,Sheng Da Hsu,Yu Ling Lin,Wei Hsiang Lee,Wei Hsiang Lee,Chi Dung Yang,Chi Dung Yang,Hsiao Chin Hong,Ting-Yen Wei,Siang Jyun Tu,Tzi Ren Tsai,Shu Yi Ho,Ting Yan Jian,Hsin Yi Wu,Pin Rong Chen,Nai Chieh Lin,Hsin Tzu Huang,Tzu Ling Yang,Chung Yuan Pai,Chun San Tai,Wen-Liang Chen,Chia-Yen Huang,Chun-Chi Liu,Shun Long Weng,Shun Long Weng,Kuang-Wen Liao,Wen-Lian Hsu,Hsien Da Huang +29 more
TL;DR: Improvements make the miRTarBase one of the more comprehensively annotated, experimentally validated miRNA-target interactions databases and motivate additional miRNA research efforts.
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miRTarBase update 2014: an information resource for experimentally validated miRNA-target interactions
Sheng Da Hsu,Yu-Ting Tseng,Sirjana Shrestha,Yu Ling Lin,Anas Khaleel,Chih Hung Chou,Chao-Fang Chu,Hsi-Yuan Huang,Ching-Min Lin,Shu Yi Ho,Jian Ting-Yan,Feng-Mao Lin,Tzu Hao Chang,Shun-Long Weng,Shun-Long Weng,Shun-Long Weng,Kuang-Wen Liao,I-En Liao,Chun-Chi Liu,Hsien Da Huang +19 more
TL;DR: The miRTarBase database (http://mirtarbase.mbc.nctu.edu.tw/) provides the most current and comprehensive information of experimentally validated miRNA-target interactions, with a 14-fold increase to mi RNA-target interaction entries and recent improvements.
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Joint Genome-Wide Profiling of miRNA and mRNA Expression in Alzheimer's Disease Cortex Reveals Altered miRNA Regulation
TL;DR: This study used microarrays for the first joint profiling and analysis of miRNAs and mRNAs expression in brain cortex from AD and age-matched control subjects to identify a large set of miRNA-mRNA associations that are changed in AD versus control, highlighting AD-specific changes in the miRNA regulatory system.
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CircNet: a database of circular RNAs derived from transcriptome sequencing data
Yu-Chen Liu,Jian-Rong Li,Chuan-Hu Sun,Erik Andrews,Rou-Fang Chao,Feng Mao Lin,Shun Long Weng,Shun Long Weng,Sheng Da Hsu,Chieh-Chen Huang,Chao Cheng,Chun-Chi Liu,Hsien Da Huang +12 more
TL;DR: The CircNet database is to the authors' knowledge the first public database that provides tissue-specific circRNA expression profiles and circRNA–miRNA-gene regulatory networks and generates an integrated regulatory network that illustrates the regulation between circRNAs, miRNAs and genes.
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Discovery of multi-dimensional modules by integrative analysis of cancer genomic data
TL;DR: This study provides an useful protocol for uncovering hidden patterns and their biological implications in multi-dimensional ‘omic’ data by adopting a joint matrix factorization technique to address the challenge of integrative analysis ofMulti-dimensional genomics data for the discovery of combinatorial patterns.