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Elmar Krieger

Researcher at Radboud University Nijmegen Medical Centre

Publications -  44
Citations -  11719

Elmar Krieger is an academic researcher from Radboud University Nijmegen Medical Centre. The author has contributed to research in topics: Binding site & Mutation. The author has an hindex of 33, co-authored 44 publications receiving 10140 citations. Previous affiliations of Elmar Krieger include Radboud University Nijmegen.

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Increasing the precision of comparative models with YASARA NOVA--a self-parameterizing force field.

TL;DR: An all‐atom force field aimed at protein and nucleotide optimization in vacuo (NOVA), which has been specifically designed to avoid this problem and can be applied to modeling applications as well as X‐ray and NMR structure refinement.
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Improving physical realism, stereochemistry, and side-chain accuracy in homology modeling: Four approaches that performed well in CASP8.

TL;DR: In this article, the authors describe four approaches that address the last mile of the protein folding problem and have performed well during CASP8, yielding physically realistic models: YASARA, which runs molecular dynamics simulations of models in explicit solvent, using a new partly knowledge-based all atom force field derived from Amber.
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YASARA View—molecular graphics for all devices—from smartphones to workstations

TL;DR: A new approach to solve the ‘molecular graphics problem’ is described, which shares the work between GPU and multiple CPU cores, generates high-quality results with perfectly round spheres, shadows and ambient lighting and requires only OpenGL 1.0 functionality.
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A series of PDB related databases for everyday needs.

TL;DR: A series of databases that run parallel to the Protein Data Bank, used for the analysis of properties of protein structures in areas ranging from structural genomics, to cancer biology and protein design, are presented.