G
Ganapathy Rajaseger
Researcher at National University of Singapore
Publications - 7
Citations - 101
Ganapathy Rajaseger is an academic researcher from National University of Singapore. The author has contributed to research in topics: Peptide binding & Human leukocyte antigen. The author has an hindex of 4, co-authored 7 publications receiving 97 citations.
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Journal ArticleDOI
A framework to sub-type HLA supertypes.
Pandjassarame Kangueane,Meena Kishore Sakharkar,Ganapathy Rajaseger,Subhashini Bolisetty,Balasubramanian Sivasekari,Bing Zhao,Manickam Ravichandran,Paul Shapshak,S. Subbiah +8 more
TL;DR: Sub supertypes are defined, where members show functional overlap with identical repertoire, and a strategy to group HLA-A, B and C alleles into different categories of sub supertypes is described, which is moderately validated using available binding data.
Journal ArticleDOI
A novel MHCp binding prediction model.
Bing Zhao,Venkatarajan Subramanian Mathura,Ganapathy Rajaseger,Shabbir Moochhala,Meena Kishore Sakharkar,Pandjassarame Kangueane +5 more
TL;DR: A novel predictive model using information gleaned from 29 human MHCp crystal structures that is superior to many existing methods because of its potential application to any given MHC allele whose sequence is clearly defined.
Journal ArticleDOI
Types of inter-atomic interactions at the MHC-peptide interface: Identifying commonality from accumulated data
Png Eak Hock Adrian,Ganapathy Rajaseger,Venkatarajan Subramanian Mathura,Meena Kishore Sakharkar,Pandjassarame Kangueane,Pandjassarame Kangueane +5 more
TL;DR: The prevalently dominant SB interactions at the interface suggest the importance of peptide backbone conformation during MHC-peptide binding and hence emphasizes the need for accurate peptideside backbone prediction in quantitative MHC/sidechain binding calculations.
Journal ArticleDOI
HIV-1 envelope accessible surface and polarity: clade, blood, and brain.
Gopichandran Sowmya,Gunasagaran Shamini,Sathyanarayanan Anita,Meena Kishore Sakharkar,Venkat Mathura,Hector P. Rodriguez,Andrew J. Levine,Elyse J. Singer,Deborah Commins,Charurut Somboonwit,John T. Sinnott,Harcharan S Sidhu,Ganapathy Rajaseger,Peter Natesan Pushparaj,Pandajarasamme Kangueane,Paul Shapshak +15 more
TL;DR: Regression analysis shows that blood and brain gp120 and gp41 percent sequence polarity range correlate with mean Shannon entropy, which point to the use of protein modifications to enhance HIV-1 ENV vaccines across multiple clades, blood, and brain.
Fieldable Assay For Botulinum Neurotoxins
Ganapathy Rajaseger,Padmanabhan Saravanan,Vernon J. Lee,Vidhya Novem,P Eric,Shabbir Moochhala,Lee L. Hock,Ponnampalam Gopalakrishnakone +7 more
TL;DR: OIA demonstrate limits of detection lesser in range to the gold standard mouse bioassay, to standardize a rapid, sensitive and fieldable optical immunoassay for the detection of BoNTs A, B, E and F in food matrices.