抗原变异可使得多种致病微生物易于逃避宿主免疫应答。表达在感染红细胞表面的恶性疟原虫红细胞表面蛋白1（PfPMP1）与感染红细胞、内皮细胞、树突状细胞以及胎盘的单个或多个受体作用，在黏附及免疫逃避中起关键的作用。每个单倍体基因组var基因家族编码约60种成员，通过启动转录不同的var基因变异体为抗原变异提供了分子基础。

疟原虫var基因转换速率变化导致抗原变异[英]／Paul H, Robert P, Christodoulou Z, et al//Proc Natl Acad Sci U S A

Statistical method for testing the neutral mutation hypothesis by DNA polymorphism.

So far in this course we have dealt entirely with the evolution of characters that are controlled by simple Mendelian inheritance at a single locus. There are notes on the course website about gametic disequilibrium and how allele frequencies change at two loci simultaneously, but we didn’t discuss them. In every example we’ve considered we’ve imagined that we could understand something about evolution by examining the evolution of a single gene. That’s the domain of classical population genetics. For the next few weeks we’re going to be exploring a field that’s actually older than classical population genetics, although the approach we’ll be taking to it involves the use of population genetic machinery. If you know a little about the history of evolutionary biology, you may know that after the rediscovery of Mendel’s work in 1900 there was a heated debate between the “biometricians” (e.g., Galton and Pearson) and the “Mendelians” (e.g., de Vries, Correns, Bateson, and Morgan). Biometricians asserted that the really important variation in evolution didn’t follow Mendelian rules. Height, weight, skin color, and similar traits seemed to

Human biochemical genetics

Thank you very much for downloading modern applied statistics with s. As you may know, people have search hundreds times for their favorite readings like this modern applied statistics with s, but end up in harmful downloads. Rather than reading a good book with a cup of coffee in the afternoon, instead they cope with some harmful virus inside their laptop. modern applied statistics with s is available in our digital library an online access to it is set as public so you can download it instantly. Our digital library saves in multiple countries, allowing you to get the most less latency time to download any of our books like this one. Kindly say, the modern applied statistics with s is universally compatible with any devices to read.

Modern Applied Statistics With S

1. Introduction and Overview. 2. Detecting Influential Observations and Outliers. 3. Detecting and Assessing Collinearity. 4. Applications and Remedies. 5. Research Issues and Directions for Extensions. Bibliography. Author Index. Subject Index.

Regression Diagnostics: Identifying Influential Data and Sources of Collinearity

The study of phenotypic plasticity, one of the most important mechanisms of phenotypic adaptation, is by tradition focused on differences in ontogenetically static phenotypic expression in different environments. Ontogenetic reaction norms, in contrast, describe how phenotypes unfold during growth in different environments. We studied the ontogenetic reaction norms of the morphological shape of a series of defensive abdominal spines in dragonfly larvae, both in the laboratory and in a number of natural populations. In a laboratory rearing experiment, we demonstrated that these spines grew more solid and elongated when waterborne environmental cues of fish predators were present: this is evidence of phenotypic plasticity in defensive spine morphology. The ontogenetic reaction norms of defensive spines were also found to differ in natural populations with and without fish. A detailed analysis of the growth trajectories showed that this differentiation was primarily due to ontogenetic acceleration in environments with fish, leading to relatively exaggerated spine shape in these environments. However, while the ontogenetic trajectories of shape in some spines diverged at the onset of ontogeny in the two environments, those of others remained parallel until a given phase of ontogeny. Hence, the timing of the developmental divergence of these phenotypically integrated traits differed, suggesting differences in the underlying regulatory mechanisms. Our results illustrate that a conceptual integration of environmental and ontogenetic approaches to the study of phenotypic differentiation can significantly promote our understanding of the ecology and evolution of adaptive phenotypic plasticity.

Ontogenetic reaction norms of predator-induced defensive morphology in dragonfly larvae

Animal genitalia show two striking but incompletely understood evolutionary trends: a great evolutionary divergence in the shape of genitalic structures, and characteristic structural complexity. Both features are thought to result from sexual selection, but explicit comparative tests are hampered by the fact that it is difficult to quantify both morphological complexity and divergence in shape. We undertake a comparative study of multiple nongenitalic and male genital traits in a clade of 15 water strider species to quantify complexity and shape divergence. We show that genital structures are more complex and their shape more divergent among species than nongenital traits. Further, intromittent genital traits are more complex and have evolved more divergently than nonintromittent genital traits. More importantly, shape and complexity of nonintromittent genital traits show correlated evolution with indices of premating sexual selection and intromittent genital traits with postmating sexual selection, suggesting that the evolution of different components of genital morphology are shaped independently by distinct forms of sexual selection. Our quantitative results provide direct comparative support for the hypothesis that sexual selection is associated with morphological complexity in genitalic traits and highlight the importance of quantifying morphological shape and complexity, rather than size in studies of genital evolution.

https://onlinelibrary.wiley.com/doi/pdf/10.1111/j.1558-5646.2011.01411.x

Sexual selection and the evolution of genital shape and complexity in water striders

Field studies demonstrate that natural populations of a group of water striders (Heteroptera: Gerridae) that share a common mating system are characterized by weak assortative mating by size and by large sizes of mating males and females relative to single individuals. This study presents an experimental assessment of the components of mating that may contribute to these mating patterns. The effects of male and female body size on each of three components of mating were studied in three water strider species in the laboratory. Large females of all three species mated more frequently, copulated for longer and were guarded longer than small females. Large males mated more frequently than small males in all three species, and also guarded females for longer in the two species where the average of mate guarding was long. However, we found an antagonistic effect of male size on copulation duration: small males copulated for longer than large males in all three species. We show that the combined effects of these size biases mimic the mating patterns found in the wild, e.g. weak and variable assortative mating, and stronger and less variable size ratios of mating versus non-mating females relative to males. We suggest that the antagonistic effects of male size on copulation and guarding duration may be a key source of interpopulational variation in assortative mating and sexual selection on male size. Further, neither spatial or temporal covariation in size, nor mechanical constraints, caused the assortative mating observed here in this group of water striders. Some combination of male and female choice (either active or passive forms) of large mates and male-male exploitation competition for mates play potentially important roles in producing population level assortative mating in water striders.

Analysis of the causal components of assortative mating in water striders

The number of eggs fertilized by a male at any given copulation (fertilization success) is affected by a large number of factors. Male insemination and sperm competition success and various female structures and/or processes that bias paternity in favor of some males over others (cryptic female choice) are all likely to affect fertilization success. We suggest that more comprehensive measures of male fertilization success can increase our understanding of postcopulatory sexual selection. To improve our understanding of the importance of various sources of variance in male fertilization success, we conducted a series of experiments using flour beetles. Different wild-type strains were used in reciprocal double mating experiments, against a phenotypic marker strain. We assessed the relative effects of female genotype, male genotype and mating order on independent and inclusive measures of male defense ability (P1), male offense ability (P2), and female remating behavior. Female genotype influenced both P1 and P2, and male genotype interacted strongly with female genotype in its effect on P2. We also documented an interaction between female and male genotypes in the effects of mating on female remating behavior, such that females tended to remate most rapidly when mated to males of their own genotype. It is clear from our experiments that cryptic female choice influences the pattern of fertilization success in flour beetles, and we suggest that cryptic female choice may often be an important component of postcopulatory sexual selection. Future investigations would benefit from studying the multiple components of variance in male fertilization success.

The effects of male and female genotype on variance in male fertilization success in the red flour beetle (Tribolium castaneum)

Rapid divergence of male genitalia is one of the most general evolutionary trends in animals with internal fertilization, but the mechanisms of genital evolution are poorly understood. The current study represents the first comprehensive attempt to test the main hypotheses that have been suggested to account for genital evolution (the lock-and-key, sexual selection and pleiotropy hypotheses) with intraspecific data. We measure multivariate phenotypic selection in a water strider species, by relating five different components of fitness (mating frequency, fecundity, egg hatching rate, offspring survival rate and offspring growth rate) to a suite of genital and non-genital morphological traits (in total 48). Body size had a series of direct effects in both sexes. Large size in females was positively related to both fecundity and egg hatching rate. There was positive sexual selection for large size in males (mating frequency), which to some extent was offset by a reduced number of eggs laid by females mated to large males. Male genitalic morphology influenced male mating frequency, but the detected directional selection on genitalia was due to indirect selection on phenotypically correlated non-intromittent traits. Further, we found no assortative mating between male intromittent genitalia and female morphology. Neither did we find any indications of male genitalia conveying information of male genetic quality. Several new insights can be gained from our study. Most importantly, our results are in stark disagreement with the long standing lock-and-key hypothesis of genital evolution, as well as with certain models of 613

Göran Arnqvist

Papers

Ontogenetic reaction norms of predator-induced defensive morphology in dragonfly larvae

Sexual selection and the evolution of genital shape and complexity in water striders

Analysis of the causal components of assortative mating in water striders

The effects of male and female genotype on variance in male fertilization success in the red flour beetle (Tribolium castaneum)

Evolution of animal genitalia: morphological correlates of fitness components in a water strider