H
Hartmut Foerster
Researcher at Boyce Thompson Institute for Plant Research
Publications - 9
Citations - 4330
Hartmut Foerster is an academic researcher from Boyce Thompson Institute for Plant Research. The author has contributed to research in topics: MetaCyc & Genome. The author has an hindex of 6, co-authored 8 publications receiving 3887 citations.
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Journal ArticleDOI
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
Ron Caspi,Richard Billington,Luciana Ferrer,Hartmut Foerster,Carol A. Fulcher,Ingrid M. Keseler,Anamika Kothari,Markus Krummenacker,Mario Latendresse,Lukas A. Mueller,Quang Ong,Suzanne M. Paley,Pallavi Subhraveti,Daniel Weaver,Peter D. Karp +14 more
TL;DR: The BioCyc PGDBs generated by SRI are offered for adoption by any interested party for the ongoing integration of metabolic and genome-related information about an organism.
Journal ArticleDOI
MetaCyc: a multiorganism database of metabolic pathways and enzymes
Ron Caspi,Hartmut Foerster,Carol A. Fulcher,Rebecca Hopkinson,John L. Ingraham,Pallavi Kaipa,Markus Krummenacker,Suzanne M. Paley,John Pick,Seung Y. Rhee,Christophe Tissier,Peifen Zhang,Peter D. Karp +12 more
TL;DR: In the past 2 years the data content and the Pathway Tools software used to query, visualize and edit MetaCyc have been expanded significantly, and these enhancements are described in this paper.
Journal ArticleDOI
The Sol Genomics Network (SGN)—from genotype to phenotype to breeding
Noe Fernandez-Pozo,Naama Menda,Jeremy D. Edwards,Surya Saha,Isaak Y. Tecle,Susan R. Strickler,Aureliano Bombarely,Thomas Fisher-York,Anuradha Pujar,Hartmut Foerster,Aimin Yan,Lukas A. Mueller,Lukas A. Mueller +12 more
TL;DR: The Sol Genomics Network is a web portal with genomic and phenotypic data, and analysis tools for the Solanaceae family and close relatives, and a new tool was recently implemented to improve Virus-Induced Gene Silencing (VIGS) constructs called the SGN VIGS tool.
Journal ArticleDOI
MetaCyc and AraCyc. Metabolic pathway databases for plant research.
Peifen Zhang,Hartmut Foerster,Christophe Tissier,Lukas A. Mueller,Suzanne M. Paley,Peter D. Karp,Seung Y. Rhee +6 more
TL;DR: Recent enhancements to both MetaCyc and AraCyc include implementation of an evidence ontology, which has been used to provide information on data quality, expansion of the secondary metabolism node of the pathway ontology to accommodate curation of secondary metabolic pathways, and enhancement of the cellular component ontology for storing and displaying enzyme and pathway locations within subcellular compartments.
Journal Article
BioCyc: Online Resource for Genome and Metabolic Pathway Analysis
Ron Caspi,Richard A. Billington,Hartmut Foerster,Carol A. Fulcher,Ingrid M. Keseler,Anamika Kothari,Markus Krummenacker,Mario Latendresse,Lukas A. Mueller,Quang Ong,Suzanne M. Paley,Pallavi Subhraveti,Dan S. Weaver,Peter D. Karp +13 more
TL;DR: BioCyc.org is a genomic resource that contains more than 7600 Pathway/Genome Databases (PGDBs) for organisms whose genomes have been completely sequenced.