I
Ingrid M. Keseler
Researcher at SRI International
Publications - 32
Citations - 9919
Ingrid M. Keseler is an academic researcher from SRI International. The author has contributed to research in topics: EcoCyc & Genome browser. The author has an hindex of 20, co-authored 30 publications receiving 8510 citations. Previous affiliations of Ingrid M. Keseler include University of California, San Francisco & Artificial Intelligence Center.
Papers
More filters
Journal ArticleDOI
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
Ron Caspi,Richard Billington,Luciana Ferrer,Hartmut Foerster,Carol A. Fulcher,Ingrid M. Keseler,Anamika Kothari,Markus Krummenacker,Mario Latendresse,Lukas A. Mueller,Quang Ong,Suzanne M. Paley,Pallavi Subhraveti,Daniel Weaver,Peter D. Karp +14 more
TL;DR: The BioCyc PGDBs generated by SRI are offered for adoption by any interested party for the ongoing integration of metabolic and genome-related information about an organism.
Journal ArticleDOI
EcoCyc: a comprehensive database resource for Escherichia coli
Ingrid M. Keseler,Julio Collado-Vides,Socorro Gama-Castro,John L. Ingraham,Suzanne M. Paley,Ian T. Paulsen,Martín Peralta-Gil,Peter D. Karp +7 more
TL;DR: The EcoCyc database contains carefully curated information that can be used as training sets for bioinformatics prediction of entities such as promoters, operons, genetic networks, transcription factor binding sites, metabolic pathways, functionally related genes, protein complexes and protein–ligand interactions.
Journal ArticleDOI
The MetaCyc database of metabolic pathways and enzymes.
Ron Caspi,Richard Billington,Carol A. Fulcher,Ingrid M. Keseler,Anamika Kothari,Markus Krummenacker,Mario Latendresse,Peter E. Midford,Quang Ong,Wai Kit Ong,Suzanne M. Paley,Pallavi Subhraveti,Peter D. Karp +12 more
TL;DR: This article provides an update on the developments in MetaCyc during the past two years, including the expansion of data and addition of new features.
Journal ArticleDOI
Escherichia coli K-12: a cooperatively developed annotation snapshot—2005
Monica Riley,Takashi Abe,Martha B. Arnaud,Mary B. Berlyn,Frederick R. Blattner,Roy R. Chaudhuri,Jeremy D. Glasner,Takashi Horiuchi,Ingrid M. Keseler,Takehide Kosuge,Hirotada Mori,Hirotada Mori,Nicole T. Perna,Guy Plunkett,Kenneth E. Rudd,Margrethe H. Serres,Gavin H. Thomas,Nicholas R. Thomson,David S. Wishart,Barry L. Wanner +19 more
TL;DR: A snapshot analysis based on the most recent genome sequences of two E.coli K-12 strains allows comparison of their genotypes and mutant status of alleles.
Posted Content
Pathway Tools version 23.0: Integrated Software for Pathway/Genome Informatics and Systems Biology
Peter D. Karp,Suzanne M. Paley,Peter E. Midford,Markus Krummenacker,Richard Billington,Anamika Kothari,Wai Kit Ong,Pallavi Subhraveti,Ingrid M. Keseler,Ron Caspi +9 more
TL;DR: Pathway Tools as discussed by the authors is a bioinformatics software environment with a broad set of capabilities, such as a genome browser, sequence alignments, a genome-variant analyzer, and comparative-genomics operations.