J
Jejoong Yoo
Researcher at Sungkyunkwan University
Publications - 59
Citations - 2930
Jejoong Yoo is an academic researcher from Sungkyunkwan University. The author has contributed to research in topics: Molecular dynamics & DNA nanotechnology. The author has an hindex of 26, co-authored 53 publications receiving 2302 citations. Previous affiliations of Jejoong Yoo include University of Wisconsin-Madison & University of Illinois at Urbana–Champaign.
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Journal ArticleDOI
Improved Parametrization of Li+, Na+, K+, and Mg2+ Ions for All-Atom Molecular Dynamics Simulations of Nucleic Acid Systems
Jejoong Yoo,Aleksei Aksimentiev +1 more
TL;DR: This work fine-tuned van der Waals interaction parameters for specific ion pairs to reproduce experimental osmotic pressure of binary electrolyte solutions of biologically relevant ions in molecular dynamics simulations of an array of 64 parallel duplex DNA.
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Modeling and simulation of ion channels.
TL;DR: The ever increasing complexity of the computational models of ion channels reflects the dramatic advances of the authors' experimental knowledge about these systems, most importantly, fully atomistic structures of several ion channels.
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Effects of cytosine modifications on DNA flexibility and nucleosome mechanical stability
Thuy T.M. Ngo,Jejoong Yoo,Qing Dai,Qiucen Zhang,Chuan He,Chuan He,Aleksei Aksimentiev,Taekjip Ha +7 more
TL;DR: The increase in DNA flexibility increases the mechanical stability of the nucleosome and vice versa, suggesting a gene regulation mechanism where cytosine modifications change the accessibility of nucleosomal DNA through their effects on DNA flexibility.
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Large-Conductance Transmembrane Porin Made from DNA Origami.
Kerstin Göpfrich,Chen-Yu Li,Maria Ricci,Satya Prathyusha Bhamidimarri,Jejoong Yoo,Bertalan Gyenes,Alexander Ohmann,Mathias Winterhalter,Aleksei Aksimentiev,Ulrich F. Keyser +9 more
TL;DR: This work uses DNA to build the largest synthetic pore in a lipid membrane to date, approaching the dimensions of the nuclear pore complex and increasing the pore-area and the conductance 10-fold compared to previous man-made channels.
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New tricks for old dogs: improving the accuracy of biomolecular force fields by pair-specific corrections to non-bonded interactions
Jejoong Yoo,Aleksei Aksimentiev +1 more
TL;DR: Development of the NBFIX (Non-Bonded FIX) corrections to the AMBER and CHARMM force fields is reviewed and their implications for MD simulations of electrolyte solutions, dense DNA systems, Holliday junctions, protein folding, and lipid bilayer membranes are discussed.