J
Jimmie Hällman
Researcher at Royal Institute of Technology
Publications - 6
Citations - 1398
Jimmie Hällman is an academic researcher from Royal Institute of Technology. The author has contributed to research in topics: Gene & Genome. The author has an hindex of 4, co-authored 6 publications receiving 1212 citations.
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Journal ArticleDOI
The Norway spruce genome sequence and conifer genome evolution.
Björn Nystedt,Nathaniel R. Street,Anna Wetterbom,Andrea Zuccolo,Yao-Cheng Lin,Douglas G. Scofield,Francesco Vezzi,Nicolas Delhomme,Stefania Giacomello,Andrey Alexeyenko,Riccardo Vicedomini,Kristoffer Sahlin,Ellen Sherwood,Malin Elfstrand,Lydia Gramzow,Kristina Holmberg,Jimmie Hällman,Olivier Keech,Lisa Klasson,Maxim Koriabine,Melis Kucukoglu,Max Käller,Johannes Luthman,Fredrik Lysholm,Totte Niittylä,Åke Olson,Nemanja Rilakovic,Carol Ritland,Josep A. Rosselló,Juliana Stival Sena,Thomas Svensson,Carlos Talavera-López,Günter Theißen,Hannele Tuominen,Kevin Vanneste,Zhiqiang Wu,Bo Zhang,Philipp Zerbe,Lars Arvestad,Lars Arvestad,Rishikesh P. Bhalerao,Joerg Bohlmann,Jean Bousquet,Rosario Garcia Gil,Torgeir R. Hvidsten,Torgeir R. Hvidsten,Pieter J. de Jong,John MacKay,Michele Morgante,Kermit Ritland,Björn Sundberg,Stacey Lee Thompson,Yves Van de Peer,Björn Andersson,Ove Nilsson,Pär K. Ingvarsson,Joakim Lundeberg,Stefan Jansson +57 more
TL;DR: The draft assembly of the 20-gigabase genome of Norway spruce (Picea abies), the first available for any gymnosperm, is presented, revealing numerous long (>10,000 base pairs) introns, gene-like fragments, uncharacterized long non-coding RNAs and short RNAs, which opens up new genomic avenues for conifer forestry and breeding.
Journal ArticleDOI
Comparison of total and cytoplasmic mRNA reveals global regulation by nuclear retention and miRNAs.
Beata Werne Solnestam,Henrik Stranneheim,Jimmie Hällman,Max Käller,Emma Lundberg,Joakim Lundeberg,Pelin Akan +6 more
TL;DR: It is concluded that expression levels derived from the total RNA fraction be regarded as an appropriate estimate of the amount of mRNAs present in a given cell population, independent of the coding sequence length or UTRs.
Journal ArticleDOI
Comprehensive analysis of the genome transcriptome and proteome landscapes of three tumor cell lines
Pelin Akan,Andrey Alexeyenko,Paul I. Costea,Lilia A. Hedberg,Beata Werne Solnestam,Sverker Lundin,Jimmie Hällman,Emma Lundberg,Mathias Uhlén,Joakim Lundeberg +9 more
TL;DR: The advantage of integrative analysis for identifying tumor-related genes amidst numerous background mutations is demonstrated by relating genomic variation to expression/protein abundance data and use gene networks to reveal implicated pathways.
Journal ArticleDOI
The Dictyostelium discoideum RNA-dependent RNA polymerase RrpC silences the centromeric retrotransposon DIRS-1 post-transcriptionally and is required for the spreading of RNA silencing signals
Stephan Wiegand,Doreen Meier,Carsten Seehafer,Marek Malicki,Patrick Hofmann,Anika Schmith,Thomas Winckler,Balint Földesi,Benjamin Boesler,Wolfgang Nellen,Johan Reimegård,Max Käller,Jimmie Hällman,Olof Emanuelsson,Lotta Avesson,Fredrik Söderbom,Christian Hammann +16 more
TL;DR: RrpC acts at the post-transcriptional level and is involved in spreading of RNA silencing signals, both in the 5′ and 3′ directions, and reveals an asymmetric distribution of the DIRS-1 small RNAs, both along DIRs-1 and with respect to sense and antisense orientation.
Book ChapterDOI
Identification and verification of microRNAs by high-throughput sequencing.
TL;DR: This work describes how to use high-throughput sequencing followed by bioinformatics and northern blot to identify one particular class of small RNA, microRNAs.