J
Julie E. Baggs
Researcher at University of Pennsylvania
Publications - 27
Citations - 2260
Julie E. Baggs is an academic researcher from University of Pennsylvania. The author has contributed to research in topics: Circadian clock & Circadian rhythm. The author has an hindex of 16, co-authored 26 publications receiving 1942 citations. Previous affiliations of Julie E. Baggs include Scripps Research Institute & Morehouse School of Medicine.
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Journal ArticleDOI
Harmonics of Circadian Gene Transcription in Mammals
Michael E. Hughes,Luciano DiTacchio,Kevin R. Hayes,Christopher Vollmers,S. Pulivarthy,Julie E. Baggs,Satchidananda Panda,John B. Hogenesch +7 more
TL;DR: These studies illustrate the importance of time sampling with respect to multiple testing, suggest caution in use of autonomous cellular models to study clock output, and demonstrate the existence of harmonics of circadian gene expression in the mouse.
Journal ArticleDOI
Feedback repression is required for mammalian circadian clock function
Trey K. Sato,Rikuhiro G. Yamada,Hideki Ukai,Julie E. Baggs,Loren Miraglia,T. Kobayashi,David K. Welsh,David K. Welsh,David K. Welsh,Steve A. Kay,Hiroki R. Ueda,John B. Hogenesch +11 more
TL;DR: It is demonstrated that CRY-mediated repression of the CLOCK/BMAL1 complex activity is required for maintenance of circadian rhythmicity and formal proof that transcriptional feedback is requiredFor mammalian clock function is provided.
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Asparagine plays a critical role in regulating cellular adaptation to glutamine depletion
Ji Zhang,Jing Fan,Sriram Venneti,Justin R. Cross,Toshimitsu Takagi,Bhavneet Bhinder,Hakim Djaballah,Masayuki Kanai,Emily H. Cheng,Alexander R. Judkins,Bruce R. Pawel,Julie E. Baggs,Sara Cherry,Joshua D. Rabinowitz,Craig B. Thompson +14 more
TL;DR: It was found that asparagine was necessary and sufficient to suppress glutamine-withdrawal-induced apoptosis without restoring the levels of other nonessential amino acids or TCA cycle intermediates.
Journal ArticleDOI
Network Features of the Mammalian Circadian Clock
Julie E. Baggs,Thomas S. Price,Thomas S. Price,Luciano DiTacchio,Satchidananda Panda,Garret A. FitzGerald,John B. Hogenesch +6 more
TL;DR: This work developed a novel strategy termed Gene Dosage Network Analysis (GDNA) in which small interfering RNA-induced dose-dependent changes in gene expression were used to build gene association networks consistent with known biochemical constraints, and uncovered several novel network features of the circadian clock, including proportional responses and signal propagation through interacting genetic modules.
Journal ArticleDOI
Machine learning helps identify CHRONO as a circadian clock component.
Ron C. Anafi,Yool Lee,Trey K. Sato,Anand Venkataraman,Chidambaram Ramanathan,Ibrahim Halil Kavakli,Michael E. Hughes,Julie E. Baggs,Jacqueline Growe,Andrew C. Liu,Junhyong Kim,John B. Hogenesch +11 more
TL;DR: Two independent studies, one of them using a computational approach, identified CHRONO, a gene shown to modulate the activity of circadian transcription factors and alter circadian behavior in mice.