J
Jun Fan
Researcher at European Bioinformatics Institute
Publications - 6
Citations - 4542
Jun Fan is an academic researcher from European Bioinformatics Institute. The author has contributed to research in topics: UniProt & European Nucleotide Archive. The author has an hindex of 4, co-authored 5 publications receiving 719 citations.
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Journal ArticleDOI
UniProt: the universal protein knowledgebase in 2021
Alex Bateman,Maria Jesus Martin,Sandra Orchard,Michele Magrane,Rahat Agivetova,Shadab Ahmad,Emanuele Alpi,Emily H Bowler-Barnett,Ramona Britto,Borisas Bursteinas,Hema Bye-A-Jee,Ray Coetzee,Austra Cukura,Alan Wilter Sousa da Silva,Paul Denny,Tunca Doğan,ThankGod Ebenezer,Jun Fan,Leyla Jael Garcia Castro,Penelope Garmiri,George Georghiou,Leonardo Gonzales,Emma Hatton-Ellis,Abdulrahman Hussein,Alexandr Ignatchenko,Giuseppe Insana,Rizwan Ishtiaq,Petteri Jokinen,Vishal Joshi,Dushyanth Jyothi,Antonia Lock,Rodrigo Lopez,Aurelien Luciani,Jie Luo,Yvonne Lussi,Alistair MacDougall,Fábio Madeira,Mahdi Mahmoudy,Manuela Menchi,Alok Mishra,Katie Moulang,Andrew Nightingale,Carla Susana Oliveira,Sangya Pundir,Guoying Qi,Shriya Raj,Daniel Rice,Milagros Rodriguez Lopez,Rabie Saidi,Joseph Sampson,Tony Sawford,Elena Speretta,Edward Turner,Nidhi Tyagi,Preethi Vasudev,Vladimir Volynkin,Kate Warner,Xavier Watkins,Rossana Zaru,Hermann Zellner,Alan Bridge,Sylvain Poux,Nicole Redaschi,Lucila Aimo,Ghislaine Argoud-Puy,Andrea H. Auchincloss,Kristian B. Axelsen,Parit Bansal,Delphine Baratin,Marie-Claude Blatter,Jerven Bolleman,Emmanuel Boutet,Lionel Breuza,Cristina Casals-Casas,Edouard de Castro,Kamal Chikh Echioukh,Elisabeth Coudert,Béatrice A. Cuche,M Doche,Dolnide Dornevil,Anne Estreicher,Maria Livia Famiglietti,Marc Feuermann,Elisabeth Gasteiger,Sebastien Gehant,Vivienne Baillie Gerritsen,Arnaud Gos,Nadine Gruaz-Gumowski,Ursula Hinz,Chantal Hulo,Nevila Hyka-Nouspikel,Florence Jungo,Guillaume Keller,Arnaud Kerhornou,Vicente Lara,Philippe Le Mercier,Damien Lieberherr,Thierry Lombardot,Xavier D. Martin,Patrick Masson,Anne Morgat,Teresa Batista Neto,Salvo Paesano,Ivo Pedruzzi,Sandrine Pilbout,Lucille Pourcel,Monica Pozzato,Manuela Pruess,Catherine Rivoire,Christian J. A. Sigrist,K Sonesson,Andre Stutz,Shyamala Sundaram,Michael Tognolli,Laure Verbregue,Cathy H. Wu,Cecilia N. Arighi,Leslie Arminski,Chuming Chen,Yongxing Chen,John S. Garavelli,Hongzhan Huang,Kati Laiho,Peter B. McGarvey,Darren A. Natale,Karen E. Ross,C. R. Vinayaka,Qinghua Wang,Yuqi Wang,Lai-Su L. Yeh,Jian Zhang,Patrick Ruch,Douglas Teodoro +132 more
TL;DR: The UniProtKB responded to the COVID-19 pandemic through expert curation of relevant entries that were rapidly made available to the research community through a dedicated portal and a credit-based publication submission interface was developed.
Journal ArticleDOI
UniProt: the Universal Protein Knowledgebase in 2023
Alex Bateman,Maria Jesus Martin,Sandra Orchard,Michele Magrane,Shadab Ahmad,Emanuele Alpi,Emily H Bowler-Barnett,Ramona Britto,Hema Bye-a-Jee,Austra Cukura,P. Denny,Tunca Doğan,ThankGod Ebenezer,Jun Fan,Penelope Garmiri,Leonardo Jose da Costa Gonzales,Emma Hatton-Ellis,Abdulrahman Hussein,Alexandr Ignatchenko,Giuseppe Insana,Rizwan Ishtiaq,Vishal Joshi,Dushyanth Jyothi,Swaathi Kandasaamy,Antonia Lock,Aurelien Luciani,Marija Lugarić,Jie Luo,Y. Lussi,Alistair MacDougall,Fábio Madeira,Mahdi Mahmoudy,Alok Mishra,Katie Moulang,Andrew Nightingale,Sangya Pundir,Guoying Qi,Shri K. Raman Raj,Pedro Duarte da Silva Fonseca Gândara Raposo,Daniel Rice,Rabie Saidi,Rafael Santos,Elena Speretta,James Stephenson,Prabhat Totoo,Edward Turner,N. Tyagi,Preethi Vasudev,Kate Warner,Xavier Watkins,Rossana Zaru,Hermann Zellner,Alan Bridge,Lucila Aimo,Ghislaine Argoud-Puy,Andrea H. Auchincloss,Kristian B. Axelsen,Parit Bansal,Delphine Baratin,Teresa M Batista Neto,Marie-Claude Blatter,Jerven Bolleman,Emmanuel Boutet,Lionel Breuza,B. Gil,C. Casals-Casas,Kamal Chikh Echioukh,Elisabeth Coudert,Béatrice A. Cuche,Edouard de Castro,Anne Estreicher,Maria Livia Famiglietti,Marc Feuermann,Elisabeth Gasteiger,Pascale Gaudet,Sebastien Gehant,Vivienne Baillie Gerritsen,Arnaud Gos,Nadine M. Gruaz,Chantal Hulo,Nevila Hyka-Nouspikel,Florence Jungo,Arnaud Kerhornou,Philippe Le Mercier,Damien Lieberherr,Patrick Masson,Anne Morgat,Venkatesh Muthukrishnan,Salvo Paesano,Ivo Pedruzzi,Sandrine Pilbout,Lucille Pourcel,Sylvain Poux,Monica Pozzato,Manuela Pruess,Nicole Redaschi,Catherine Rivoire,Christian J. A. Sigrist,K Sonesson,Shyamala Sundaram,Cathy H. Wu,Cecilia N. Arighi,Leslie Arminski,Chuming Chen,Yongxing Chen,Hongzhan Huang,Kati Laiho,Peter B. McGarvey,Darren A. Natale,Karen F. Ross,C. R. Vinayaka,Qinghua Wang,Yuqi Wang,Jian Zhang +113 more
TL;DR:
Journal ArticleDOI
The European Nucleotide Archive in 2019.
Clara Amid,Blaise T. F. Alako,Vishnukumar Balavenkataraman Kadhirvelu,Tony Burdett,Josephine Burgin,Jun Fan,Peter W. Harrison,Sam Holt,Abdulrahman Hussein,Eugene Ivanov,Suran Jayathilaka,Simon Kay,Thomas M. Keane,Rasko Leinonen,Xin Liu,Josué Martínez-Villacorta,Annalisa Milano,Amir Pakseresht,Nadim Rahman,Jeena Rajan,Kethi Reddy,Edward Richards,Dmitriy Smirnov,Alexey Sokolov,Senthilnathan Vijayaraja,Guy Cochrane +25 more
TL;DR: Making the world’s public sequencing datasets available to the scientific community, the ENA represents a globally comprehensive nucleotide sequence resource in 2019 and provides an insight into selected key areas of development.
Journal ArticleDOI
The European Nucleotide Archive in 2020.
Peter W. Harrison,Alisha Ahamed,Raheela Aslam,Blaise T. F. Alako,Josephine Burgin,Nicola Buso,Mélanie Courtot,Jun Fan,Dipayan Gupta,Muhammad Haseeb,Sam Holt,Talal Ibrahim,Eugene Ivanov,Suran Jayathilaka,Vishnukumar Balavenkataraman Kadhirvelu,Manish Kumar,Rodrigo Lopez,Simon Kay,Rasko Leinonen,Xin Liu,Colman O’Cathail,Amir Pakseresht,Youngmi Park,Stephane Pesant,Nadim Rahman,Jeena Rajan,Alexey Sokolov,Senthilnathan Vijayaraja,Zahra Waheed,Ahmad Zyoud,Tony Burdett,Guy Cochrane +31 more
TL;DR: The major developments to ENA services and content in 2020 are highlighted, focussing in particular on the recently released updated ENA browser, modernisation of the release process and the authors' data coordination collaborations with specific research communities.
Journal ArticleDOI
FAANG, establishing metadata standards, validation and best practices for the farmed and companion animal community.
Peter W. Harrison,Jun Fan,David J. Richardson,Laura Clarke,Daniel R. Zerbino,Guy Cochrane,Alan Archibald,C. J. Schmidt,Paul Flicek +8 more
TL;DR: The Functional Annotation of ANimal Genomes (FAANG) project aims to provide high quality functional annotation of animal genomes with an initial focus on farmed and companion animals and to maximise effectiveness and inter‐comparability of assay data.