K
Karen E. Ross
Researcher at Georgetown University Medical Center
Publications - 34
Citations - 4842
Karen E. Ross is an academic researcher from Georgetown University Medical Center. The author has contributed to research in topics: Transposition (music) & Recombinase. The author has an hindex of 13, co-authored 34 publications receiving 1107 citations. Previous affiliations of Karen E. Ross include University UCINF & University of Delaware.
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Journal ArticleDOI
UniProt: the universal protein knowledgebase in 2021
Alex Bateman,Maria Jesus Martin,Sandra Orchard,Michele Magrane,Rahat Agivetova,Shadab Ahmad,Emanuele Alpi,Emily H Bowler-Barnett,Ramona Britto,Borisas Bursteinas,Hema Bye-A-Jee,Ray Coetzee,Austra Cukura,Alan Wilter Sousa da Silva,Paul Denny,Tunca Doğan,ThankGod Ebenezer,Jun Fan,Leyla Jael Garcia Castro,Penelope Garmiri,George Georghiou,Leonardo Gonzales,Emma Hatton-Ellis,Abdulrahman Hussein,Alexandr Ignatchenko,Giuseppe Insana,Rizwan Ishtiaq,Petteri Jokinen,Vishal Joshi,Dushyanth Jyothi,Antonia Lock,Rodrigo Lopez,Aurelien Luciani,Jie Luo,Yvonne Lussi,Alistair MacDougall,Fábio Madeira,Mahdi Mahmoudy,Manuela Menchi,Alok Mishra,Katie Moulang,Andrew Nightingale,Carla Susana Oliveira,Sangya Pundir,Guoying Qi,Shriya Raj,Daniel Rice,Milagros Rodriguez Lopez,Rabie Saidi,Joseph Sampson,Tony Sawford,Elena Speretta,Edward Turner,Nidhi Tyagi,Preethi Vasudev,Vladimir Volynkin,Kate Warner,Xavier Watkins,Rossana Zaru,Hermann Zellner,Alan Bridge,Sylvain Poux,Nicole Redaschi,Lucila Aimo,Ghislaine Argoud-Puy,Andrea H. Auchincloss,Kristian B. Axelsen,Parit Bansal,Delphine Baratin,Marie-Claude Blatter,Jerven Bolleman,Emmanuel Boutet,Lionel Breuza,Cristina Casals-Casas,Edouard de Castro,Kamal Chikh Echioukh,Elisabeth Coudert,Béatrice A. Cuche,M Doche,Dolnide Dornevil,Anne Estreicher,Maria Livia Famiglietti,Marc Feuermann,Elisabeth Gasteiger,Sebastien Gehant,Vivienne Baillie Gerritsen,Arnaud Gos,Nadine Gruaz-Gumowski,Ursula Hinz,Chantal Hulo,Nevila Hyka-Nouspikel,Florence Jungo,Guillaume Keller,Arnaud Kerhornou,Vicente Lara,Philippe Le Mercier,Damien Lieberherr,Thierry Lombardot,Xavier D. Martin,Patrick Masson,Anne Morgat,Teresa Batista Neto,Salvo Paesano,Ivo Pedruzzi,Sandrine Pilbout,Lucille Pourcel,Monica Pozzato,Manuela Pruess,Catherine Rivoire,Christian J. A. Sigrist,K Sonesson,Andre Stutz,Shyamala Sundaram,Michael Tognolli,Laure Verbregue,Cathy H. Wu,Cecilia N. Arighi,Leslie Arminski,Chuming Chen,Yongxing Chen,John S. Garavelli,Hongzhan Huang,Kati Laiho,Peter B. McGarvey,Darren A. Natale,Karen E. Ross,C. R. Vinayaka,Qinghua Wang,Yuqi Wang,Lai-Su L. Yeh,Jian Zhang,Patrick Ruch,Douglas Teodoro +132 more
TL;DR: The UniProtKB responded to the COVID-19 pandemic through expert curation of relevant entries that were rapidly made available to the research community through a dedicated portal and a credit-based publication submission interface was developed.
Journal ArticleDOI
iPTMnet: an integrated resource for protein post-translational modification network discovery.
Hongzhan Huang,Cecilia N. Arighi,Cecilia N. Arighi,Karen E. Ross,Jia Ren,Gang Li,Sheng-Chih Chen,Qinghua Wang,Qinghua Wang,Julie Cowart,K. Vijay-Shanker,Cathy H. Wu,Cathy H. Wu,Cathy H. Wu +13 more
TL;DR: Several examples, including functional interpretation of phosphoproteomic data, demonstrate iPTMnet as a gateway for visual exploration and systematic analysis of PTM networks and conservation, thereby enabling PTM discovery and hypothesis generation.
Journal ArticleDOI
GlyGen: Computational and Informatics Resources for Glycoscience.
William S. York,Raja Mazumder,Rene Ranzinger,Nathan Edwards,Robel Kahsay,Kiyoko F. Aoki-Kinoshita,Matthew Campbell,Richard D. Cummings,Ten Feizi,Maria Jesus Martin,Darren A. Natale,Nicolle H. Packer,Robert J. Woods,Gaurav Agarwal,Sena Arpinar,Sanath Bhat,Judith A. Blake,Leyla Jael Garcia Castro,Brian C. Fochtman,Jeffrey C. Gildersleeve,Radoslav Goldman,Xavier Holmes,Vinamra Jain,Sujeet Kulkarni,Rupali Mahadik,Akul Y. Mehta,Reza Mousavi,Sandeep Nakarakommula,Rahi Navelkar,Nagarajan Pattabiraman,Michael Pierce,Karen E. Ross,Preethi Vasudev,Jeet Vora,Tatiana Williamson,Wenjin Zhang +35 more
Journal ArticleDOI
Protein Ontology: a controlled structured network of protein entities
Darren A. Natale,Cecilia N. Arighi,Judith A. Blake,Carol J. Bult,Karen R. Christie,Julie Cowart,Peter D'Eustachio,Alexander D. Diehl,Harold J. Drabkin,Olivia Helfer,Hongzhan Huang,Anna Maria Masci,Jia-Qian Ren,Natalia V. Roberts,Karen E. Ross,Alan Ruttenberg,Veronica Shamovsky,Barry Smith,Meher Shruti Yerramalla,Jian-Jian Zhang,Aisha A. AlJanahi,Irem Celen,Cynthia Gan,Mengxi Lv,Emily Schuster-Lezell,Cathy H. Wu +25 more
TL;DR: The Protein Ontology (PRO) formally defines protein entities and explicitly represents their major forms and interrelations, as well as new points of access to the data and new applications of PRO in immunology and proteomics.
Journal ArticleDOI
Protein Ontology (PRO): enhancing and scaling up the representation of protein entities
Darren A. Natale,Cecilia N. Arighi,Judith A. Blake,Jonathan P. Bona,Chuming Chen,Sheng-Chih Chen,Karen R. Christie,Julie Cowart,Peter D'Eustachio,Alexander D. Diehl,Harold J. Drabkin,William D. Duncan,William D. Duncan,Hongzhan Huang,Jia Ren,Karen E. Ross,Alan Ruttenberg,Veronica Shamovsky,Barry Smith,Qinghua Wang,Jian Zhang,Abdelrahman H Elsayed,Cathy H. Wu,Cathy H. Wu +23 more
TL;DR: A standardized representation of proteoforms is developed using UniProtKB as a sequence reference and PSI-MOD as a post-translational modification reference to support the anticipated growth of PRO and facilitate discoverability of and allow aggregation of data relating to protein entities.