K
Kate Warner
Researcher at University at Buffalo
Publications - 5
Citations - 8467
Kate Warner is an academic researcher from University at Buffalo. The author has contributed to research in topics: Ontology (information science) & UniProt. The author has an hindex of 3, co-authored 3 publications receiving 3013 citations.
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Journal ArticleDOI
UniProt: the universal protein knowledgebase in 2021
Alex Bateman,Maria Jesus Martin,Sandra Orchard,Michele Magrane,Rahat Agivetova,Shadab Ahmad,Emanuele Alpi,Emily H Bowler-Barnett,Ramona Britto,Borisas Bursteinas,Hema Bye-A-Jee,Ray Coetzee,Austra Cukura,Alan Wilter Sousa da Silva,Paul Denny,Tunca Doğan,ThankGod Ebenezer,Jun Fan,Leyla Jael Garcia Castro,Penelope Garmiri,George Georghiou,Leonardo Gonzales,Emma Hatton-Ellis,Abdulrahman Hussein,Alexandr Ignatchenko,Giuseppe Insana,Rizwan Ishtiaq,Petteri Jokinen,Vishal Joshi,Dushyanth Jyothi,Antonia Lock,Rodrigo Lopez,Aurelien Luciani,Jie Luo,Yvonne Lussi,Alistair MacDougall,Fábio Madeira,Mahdi Mahmoudy,Manuela Menchi,Alok Mishra,Katie Moulang,Andrew Nightingale,Carla Susana Oliveira,Sangya Pundir,Guoying Qi,Shriya Raj,Daniel Rice,Milagros Rodriguez Lopez,Rabie Saidi,Joseph Sampson,Tony Sawford,Elena Speretta,Edward Turner,Nidhi Tyagi,Preethi Vasudev,Vladimir Volynkin,Kate Warner,Xavier Watkins,Rossana Zaru,Hermann Zellner,Alan Bridge,Sylvain Poux,Nicole Redaschi,Lucila Aimo,Ghislaine Argoud-Puy,Andrea H. Auchincloss,Kristian B. Axelsen,Parit Bansal,Delphine Baratin,Marie-Claude Blatter,Jerven Bolleman,Emmanuel Boutet,Lionel Breuza,Cristina Casals-Casas,Edouard de Castro,Kamal Chikh Echioukh,Elisabeth Coudert,Béatrice A. Cuche,M Doche,Dolnide Dornevil,Anne Estreicher,Maria Livia Famiglietti,Marc Feuermann,Elisabeth Gasteiger,Sebastien Gehant,Vivienne Baillie Gerritsen,Arnaud Gos,Nadine Gruaz-Gumowski,Ursula Hinz,Chantal Hulo,Nevila Hyka-Nouspikel,Florence Jungo,Guillaume Keller,Arnaud Kerhornou,Vicente Lara,Philippe Le Mercier,Damien Lieberherr,Thierry Lombardot,Xavier D. Martin,Patrick Masson,Anne Morgat,Teresa Batista Neto,Salvo Paesano,Ivo Pedruzzi,Sandrine Pilbout,Lucille Pourcel,Monica Pozzato,Manuela Pruess,Catherine Rivoire,Christian J. A. Sigrist,K Sonesson,Andre Stutz,Shyamala Sundaram,Michael Tognolli,Laure Verbregue,Cathy H. Wu,Cecilia N. Arighi,Leslie Arminski,Chuming Chen,Yongxing Chen,John S. Garavelli,Hongzhan Huang,Kati Laiho,Peter B. McGarvey,Darren A. Natale,Karen E. Ross,C. R. Vinayaka,Qinghua Wang,Yuqi Wang,Lai-Su L. Yeh,Jian Zhang,Patrick Ruch,Douglas Teodoro +132 more
TL;DR: The UniProtKB responded to the COVID-19 pandemic through expert curation of relevant entries that were rapidly made available to the research community through a dedicated portal and a credit-based publication submission interface was developed.
Journal ArticleDOI
The Gene Ontology Resource: 20 years and still GOing strong
Seth Carbon,Eric Douglass,Nathan Dunn,Benjamin M. Good,Nomi L. Harris,Suzanna E. Lewis,Christopher J. Mungall,S. Basu,Rex L. Chisholm,Robert J. Dodson,E. Hartline,Petra Fey,Paul Thomas,Laurent-Philippe Albou,Dustin Ebert,M. J. Kesling,Huaiyu Mi,Anushya Muruganujan,Xiaosong Huang,S. Poudel,Tremayne Mushayahama,James C. Hu,Sandra A. LaBonte,Deborah A. Siegele,Giulia Antonazzo,Helen Attrill,Nicholas H. Brown,S. Fexova,Phani V. Garapati,T. E.M. Jones,Steven J Marygold,Gillian Millburn,Alix J. Rey,Vítor Trovisco,G. Dos Santos,David B. Emmert,Kathleen Falls,Pinglei Zhou,Joshua L. Goodman,Victor B. Strelets,Jim Thurmond,Mélanie Courtot,D. S. Osumi,Helen Parkinson,Paola Roncaglia,Marcio Luis Acencio,Martin Kuiper,A. Lreid,Colin Logie,Ruth C. Lovering,Rachael P. Huntley,Paul Denny,Nancy H. Campbell,Barbara Kramarz,Vanessa Acquaah,S. H. Ahmad,H. Chen,J. H. Rawson,Marcus C. Chibucos,Michelle G. Giglio,Suvarna Nadendla,Rebecca Tauber,Margaret Duesbury,N. T. Del,Birgit H M Meldal,Livia Perfetto,Pablo Porras,Sandra Orchard,Anjali Shrivastava,Z. Xie,Hsin-Yu Chang,Robert D. Finn,Alex L. Mitchell,Neil D. Rawlings,Lorna Richardson,Amaia Sangrador-Vegas,Judith A. Blake,Karen R. Christie,Mary E. Dolan,H. Drabkin,David P. Hill,Li Ni,D. Sitnikov,Midori A. Harris,Stephen G. Oliver,Kim Rutherford,Valerie Wood,Jacqueline Hayles,Jürg Bähler,Antonia Lock,Elizabeth R Bolton,J L De Pons,Melinda R. Dwinell,G. T. Hayman,Stan Laulederkind,Mary Shimoyama,Marek Tutaj,Shur-Jen Wang,Peter D'Eustachio,Lisa Matthews,James P. Balhoff,Suzi Aleksander,Gail Binkley,B. L. Dunn,J. M. Cherry,Stacia R. Engel,Felix Gondwe,Kalpana Karra,Kevin A. MacPherson,Stuart R. Miyasato,Robert S. Nash,P. C. Ng,Travis K. Sheppard,A. Shrivatsav Vp,Matt Simison,Marek S. Skrzypek,Shuai Weng,Edith D. Wong,Marc Feuermann,Pascale Gaudet,E. Bakker,Tanya Z. Berardini,Leonore Reiser,Shankar Subramaniam,Eva Huala,C. Arighi,A. Auchincloss,K. Axelsen,G. P. Argoud,Alex Bateman,B. Bely,M. C. Blatter,E. Boutet,L. Breuza,A. Bridge,R. Britto,H. Bye-A-Jee,C. Casals-Casas,E. Coudert,A. Estreicher,L. Famiglietti,P. Garmiri,George Georghiou,A. Gos,N. Gruaz-Gumowski,E. Hatton-Ellis,U. Hinz,C. Hulo,A. Ignatchenko,F. Jungo,G. Keller,K. Laiho,P. Lemercier,D. Lieberherr,Y. Lussi,A. Mac-Dougall,M. Magrane,Maria Jesus Martin,P. Masson,D. A. Natale,N. N. Hyka,I. Pedruzzi,K. Pichler,S. Poux,C. Rivoire,M. Rodriguez-Lopez,T. Sawford,Elena Speretta,A. Shypitsyna,A. Stutz,S. Sundaram,M. Tognolli,N. Tyagi,Kate Warner,Rossana Zaru,C. Wu,Juancarlos Chan,J. Cho,Sibyl Gao,Christian A. Grove,M. C. Harrison,Kevin L. Howe,Raymond Lee,Jane E. Mendel,Hans-Michael Müller,Daniela Raciti,K. Van Auken,Matthew Berriman,Lincoln Stein,Paul W. Sternberg,Doug Howe,Sabrina Toro,Monte Westerfield +192 more
TL;DR: GO-CAM, a new framework for representing gene function that is more expressive than standard GO annotations, has been released, and users can now explore the growing repository of these models.
Journal ArticleDOI
The Gene Ontology resource: enriching a GOld mine
Seth Carbon,Eric Douglass,Benjamin M. Good,Deepak Unni,Nomi L. Harris,Christopher J. Mungall,Siddartha Basu,Rex L. Chisholm,Robert J. Dodson,Eric Hartline,Petra Fey,Paul Thomas,Laurent-Philippe Albou,Dustin Ebert,Michael J Kesling,Huaiyu Mi,Anushya Muruganujan,Xiaosong Huang,Tremayne Mushayahama,Sandra A. LaBonte,Deborah A. Siegele,Giulia Antonazzo,Helen Attrill,Nicholas H. Brown,Phani V. Garapati,Steven J Marygold,Vítor Trovisco,Gil dos Santos,Kathleen Falls,Christopher J. Tabone,Pinglei Zhou,Joshua L. Goodman,Victor B. Strelets,Jim Thurmond,Penelope Garmiri,Rizwan Ishtiaq,Milagros Rodríguez-López,Marcio Luis Acencio,Martin Kuiper,Astrid Lægreid,Colin Logie,Ruth C. Lovering,Barbara Kramarz,Shirin C C Saverimuttu,Sandra M Pinheiro,Heather Gunn,Renzhi Su,Katherine E Thurlow,Marcus C. Chibucos,Michelle G. Giglio,Suvarna Nadendla,James B. Munro,Rebecca C. Jackson,Margaret Duesbury,Noemi del-Toro,Birgit H M Meldal,Kalpana Paneerselvam,Livia Perfetto,Pablo Porras,Sandra Orchard,Anjali Shrivastava,Hsin-Yu Chang,Robert D. Finn,Alex L. Mitchell,Neil D. Rawlings,Lorna Richardson,Amaia Sangrador-Vegas,Judith A. Blake,Karen R. Christie,Mary E. Dolan,Harold J. Drabkin,David P. Hill,Li Ni,D. Sitnikov,Midori A. Harris,Stephen G. Oliver,Kim Rutherford,Valerie Wood,Jaqueline Hayles,Jürg Bähler,Elizabeth R Bolton,Jeffery L De Pons,Melinda R. Dwinell,G. Thomas Hayman,Mary L. Kaldunski,Anne E. Kwitek,Stanley J. F. Laulederkind,Cody Plasterer,Marek Tutaj,Mahima Vedi,Shur-Jen Wang,Peter D'Eustachio,Lisa Matthews,James P. Balhoff,Suzi Aleksander,Michael J Alexander,J. Michael Cherry,Stacia R. Engel,Felix Gondwe,Kalpana Karra,Stuart R. Miyasato,Robert S. Nash,Matt Simison,Marek S. Skrzypek,Shuai Weng,Edith D. Wong,Marc Feuermann,Pascale Gaudet,Anne Morgat,Erica Bakker,Tanya Z. Berardini,Leonore Reiser,Shabari Subramaniam,Eva Huala,Cecilia N. Arighi,Andrea H. Auchincloss,Kristian B. Axelsen,Ghislaine Argoud-Puy,Alex Bateman,Marie-Claude Blatter,Emmanuel Boutet,Emily H. Bowler,Lionel Breuza,Alan Bridge,Ramona Britto,Hema Bye-A-Jee,Cristina Casals Casas,Elisabeth Coudert,Paul Denny,Anne Estreicher,Maria Livia Famiglietti,George Georghiou,Arnaud Gos,Nadine Gruaz-Gumowski,Emma Hatton-Ellis,Chantal Hulo,Alexandr Ignatchenko,Florence Jungo,Kati Laiho,Philippe Le Mercier,Damien Lieberherr,Antonia Lock,Yvonne Lussi,Alistair MacDougall,Michele Magrane,Maria Jesus Martin,Patrick Masson,Darren A. Natale,Nevila Hyka-Nouspikel,Ivo Pedruzzi,Lucille Pourcel,Sylvain Poux,Sangya Pundir,Catherine Rivoire,Elena Speretta,Shyamala Sundaram,Nidhi Tyagi,Kate Warner,Rossana Zaru,Cathy H. Wu,Alexander D. Diehl,Juancarlos Chan,Christian A. Grove,Raymond Lee,Hans-Michael Müller,Daniela Raciti,Kimberly Van Auken,Paul W. Sternberg,Matthew Berriman,Michael Paulini,Kevin L. Howe,Sibyl Gao,Adam Wright,Lincoln Stein,Douglas G. Howe,Sabrina Toro,Monte Westerfield,Pankaj Jaiswal,Laurel Cooper,Justin Elser +179 more
TL;DR: A historical archive covering the past 15 years of GO data with a consistent format and file structure for both the ontology and annotations is made available to maintain consistency with other ontologies.
Journal ArticleDOI
UniProt: the Universal Protein Knowledgebase in 2023
Alex Bateman,Maria Jesus Martin,Sandra Orchard,Michele Magrane,Shadab Ahmad,Emanuele Alpi,Emily H Bowler-Barnett,Ramona Britto,Hema Bye-a-Jee,Austra Cukura,P. Denny,Tunca Doğan,ThankGod Ebenezer,Jun Fan,Penelope Garmiri,Leonardo Jose da Costa Gonzales,Emma Hatton-Ellis,Abdulrahman Hussein,Alexandr Ignatchenko,Giuseppe Insana,Rizwan Ishtiaq,Vishal Joshi,Dushyanth Jyothi,Swaathi Kandasaamy,Antonia Lock,Aurelien Luciani,Marija Lugarić,Jie Luo,Y. Lussi,Alistair MacDougall,Fábio Madeira,Mahdi Mahmoudy,Alok Mishra,Katie Moulang,Andrew Nightingale,Sangya Pundir,Guoying Qi,Shri K. Raman Raj,Pedro Duarte da Silva Fonseca Gândara Raposo,Daniel Rice,Rabie Saidi,Rafael Santos,Elena Speretta,James Stephenson,Prabhat Totoo,Edward Turner,N. Tyagi,Preethi Vasudev,Kate Warner,Xavier Watkins,Rossana Zaru,Hermann Zellner,Alan Bridge,Lucila Aimo,Ghislaine Argoud-Puy,Andrea H. Auchincloss,Kristian B. Axelsen,Parit Bansal,Delphine Baratin,Teresa M Batista Neto,Marie-Claude Blatter,Jerven Bolleman,Emmanuel Boutet,Lionel Breuza,B. Gil,C. Casals-Casas,Kamal Chikh Echioukh,Elisabeth Coudert,Béatrice A. Cuche,Edouard de Castro,Anne Estreicher,Maria Livia Famiglietti,Marc Feuermann,Elisabeth Gasteiger,Pascale Gaudet,Sebastien Gehant,Vivienne Baillie Gerritsen,Arnaud Gos,Nadine M. Gruaz,Chantal Hulo,Nevila Hyka-Nouspikel,Florence Jungo,Arnaud Kerhornou,Philippe Le Mercier,Damien Lieberherr,Patrick Masson,Anne Morgat,Venkatesh Muthukrishnan,Salvo Paesano,Ivo Pedruzzi,Sandrine Pilbout,Lucille Pourcel,Sylvain Poux,Monica Pozzato,Manuela Pruess,Nicole Redaschi,Catherine Rivoire,Christian J. A. Sigrist,K Sonesson,Shyamala Sundaram,Cathy H. Wu,Cecilia N. Arighi,Leslie Arminski,Chuming Chen,Yongxing Chen,Hongzhan Huang,Kati Laiho,Peter B. McGarvey,Darren A. Natale,Karen F. Ross,C. R. Vinayaka,Qinghua Wang,Yuqi Wang,Jian Zhang +113 more
TL;DR:
Journal ArticleDOI
The Gene Ontology knowledgebase in 2023
Suzi Aleksander,James P. Balhoff,Seth Carbon,J. M. Cherry,H. Drabkin,Dustin Ebert,Marc Feuermann,Pascale Gaudet,Nomi L. Harris,David J. Hill,Huaiyu Mi,Sierra A. T. Moxon,Christopher J. Mungall,Anushya Muruganugan,Tremayne Mushayahama,Paul W. Sternberg,Paul Thomas,Kimberly Van Auken,Jolene Ramsey,Deborah A. Siegele,Rex L. Chisholm,Petra Fey,Maria Cristina Aspromonte,María Victoria Nugnes,Federica Quaglia,Silvio C. E. Tosatto,Michelle G. Giglio,Suvarna Nadendla,Giulia Antonazzo,Helen Attrill,Gilberto dos Santos,Steven J Marygold,Victor B. Strelets,Christopher J. Tabone,Jim Thurmond,Pinglei Zhou,Saadullah H Ahmed,Praoparn Asanitthong,Diana Luna Buitrago,Meltem Nur Erdol,Matthew C. Gage,Mohamed Ali Kadhum,Kan Yan Chloe Li,Miao Long,Aleksandra Michalak,Angeline Pesala,Armalya Pritazahra,Shirin C C Saverimuttu,Renzhi Su,Katherine E Thurlow,Ruth C. Lovering,Colin Logie,Snezhana Oliferenko,Judith A. Blake,Karen R. Christie,Lori E. Corbani,Mary E Dolan,L. Ni,D. Sitnikov,Cynthia L. Smith,Alayne Cuzick,James Seager,Laurel Cooper,Justin Elser,Pankaj Jaiswal,Parul Gupta,Sushma Naithani,Manuel Lera-Ramirez,Kim Rutherford,Valerie Wood,Jeff De Pons,Melinda R. Dwinell,G. T. Hayman,Mary L. Kaldunski,Anne E. Kwitek,Stan Laulederkind,Marek Tutaj,Mahima Vedi,Shur-Jen Wang,Peter D'Eustachio,Lucila Aimo,Kristian B. Axelsen,Alan Bridge,Nevila Hyka-Nouspikel,Stacia R. Engel,Kalpana Karra,Stuart R. Miyasato,Robert S. Nash,Marek S. Skrzypek,Shuai Wang,Edith D. Wong,Erika Bakker,Tanya Z. Berardini,Leonore Reiser,Andrea H. Auchincloss,Ghislaine Argoud-Puy,Marie-Claude Blatter,Emmanuel Boutet,Lionel Breuza,C. Casals-Casas,Elisabeth Coudert,Anne Estreicher,Maria Livia Famiglietti,Arnaud Gos,Nadine Gruaz-Gumowski,Chantal Hulo,Florence Jungo,Philippe Le Mercier,Damien Lieberherr,Patrick Masson,Anne Morgat,Ivo Pedruzzi,Lucille Pourcel,Sylvain Poux,Catherine Rivoire,Shyamala Sundaram,Alex Bateman,Emily H Bowler-Barnett,Hema Bye-a-Jee,P. Denny,Alexandr Ignatchenko,Rizwan Ishtiaq,Antonia Lock,Y. Lussi,Michele Magrane,Maria Jesus Martin,Sandra Orchard,Pedro Amakasu Raposo,Elena Speretta,N. Tyagi,Kate Warner,Rossana Zaru,Alexander D. Diehl,Raymond Lee,Juancarlos Chan,Stavros Diamantakis,Daniela Raciti,Magdalena Zarowiecki,Malcolm E. Fisher,Christina James-Zorn,Virgilio G. Ponferrada,Aaron M. Zorn,Sridhar Ramachandran,Leyla Ruzicka,Monte Westerfield +144 more
TL;DR: The Gene Ontology (GO) knowledgebase as discussed by the authors is a comprehensive resource concerning the functions of genes and gene products (proteins and noncoding RNAs) (http://geneontology.org).