J
Jurgen Kooren
Researcher at Erasmus University Rotterdam
Publications - 5
Citations - 1610
Jurgen Kooren is an academic researcher from Erasmus University Rotterdam. The author has contributed to research in topics: Chromatin & Histone code. The author has an hindex of 5, co-authored 5 publications receiving 1554 citations.
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Journal ArticleDOI
CTCF mediates long-range chromatin looping and local histone modification in the β-globin locus
Erik Splinter,Helen Heath,Jurgen Kooren,Robert-Jan Palstra,Petra Klous,Frank Grosveld,Niels Galjart,Wouter de Laat +7 more
TL;DR: The data demonstrate that CTCF is directly involved in chromatin architecture and regulates local balance between active and repressive chromatin marks and postulate that throughout the genome, relative position and stability of C TCF-mediated loops determine their effect on enhancer-promoter interactions, with gene insulation as one possible outcome.
Journal ArticleDOI
CTCF mediates long-range chromatin looping and local histone modification in the beta-globin locus
Erik Splinter,Helen Heath,Jurgen Kooren,Robert-Jan Palstra,Petra Klous,Frank Grosveld,Niels Galjart,Wouter de Laat +7 more
TL;DR: The data demonstrate that CTCF is directly involved in chromatin architecture and regulates local balance between active and repressive chromatin marks and postulate that throughout the genome, relative position and stability of C TCF-mediated loops determine their effect on enhancer-promoter interactions, with gene insulation as one possible outcome.
Journal ArticleDOI
An evaluation of 3C-based methods to capture DNA interactions.
TL;DR: The intricacies of 3C and new 3C-based methods including the 4C, 5C and ChIP-loop assay are discussed, for example, to demonstrate that regulatory DNA elements communicate with distant target genes through direct physical interactions that loop out the intervening chromatin fiber.
Book ChapterDOI
Three-dimensional organization of gene expression in erythroid cells.
Wouter de Laat,Petra Klous,Jurgen Kooren,Daan Noordermeer,Robert-Jan Palstra,Marieke Simonis,Erik Splinter,Frank Grosveld +7 more
TL;DR: The most recent insight into the three-dimensional organization of gene expression is discussed, which shows that regulatory DNA elements communicate with the genes through physical interaction, which loops out the intervening chromatin fiber.
Journal ArticleDOI
β-Globin Active Chromatin Hub Formation in Differentiating Erythroid Cells and in p45 NF-E2 Knock-out Mice
Jurgen Kooren,Robert-Jan Palstra,Petra Klous,Erik Splinter,Marieke von Lindern,Frank Grosveld,Wouter de Laat +6 more
TL;DR: This work used recently established I/11 cells as a model system that faithfully recapitulates the in vivo erythroid differentiation program to study the molecular events that accompany and underlie ACH formation, and used knock-out mice to show that the erythyroid transcription factor p45 NF-E2, which has been implicated in β-globin gene regulation, is dispensable for β- globin A CH formation.