K
Kui Wang
Researcher at Nankai University
Publications - 11
Citations - 377
Kui Wang is an academic researcher from Nankai University. The author has contributed to research in topics: Triangle inequality & Information theory. The author has an hindex of 5, co-authored 11 publications receiving 194 citations. Previous affiliations of Kui Wang include University of Pennsylvania & University of Alberta.
Papers
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Journal ArticleDOI
Deep learning enables accurate clustering with batch effect removal in single-cell RNA-seq analysis
Xiangjie Li,Xiangjie Li,Xiangjie Li,Kui Wang,Kui Wang,Yafei Lyu,Huize Pan,Jingxiao Zhang,Dwight Stambolian,Katalin Susztak,Muredach P. Reilly,Gang Hu,Gang Hu,Mingyao Li +13 more
TL;DR: A scalable unsupervised deep embedding algorithm that clusters scRNA-seq data by iteratively optimizing a clustering objective function and enables removal of batch effects is introduced.
Journal ArticleDOI
APOE and TREM2 regulate amyloid-responsive microglia in Alzheimer’s disease
Aivi T. Nguyen,Kui Wang,Kui Wang,Gang Hu,Gang Hu,Xuran Wang,Zhen Miao,Joshua A Azevedo,EunRan Suh,Vivianna M. Van Deerlin,David Choi,Kathryn Roeder,Mingyao Li,Edward B. Lee +13 more
TL;DR: It is demonstrated that APOE and TREM2 risk variants are associated with a significant reduction in CD163-positive amyloid-responsive microglia, highlighting the diverse microglial response in AD and underscore how genetic risk factors influence cellular responses to underlying pathologies.
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Highly accurate and consistent method for prediction of helix and strand content from primary protein sequences
TL;DR: A method for prediction of helix/strand content from primary protein sequences that is fundamentally different from currently available methods and has much better accuracy when compared with other existing methods, in contrast to other reported results that often target small sets of specific protein types, such as globular proteins.
Journal ArticleDOI
Human structural proteome-wide characterization of Cyclosporine A targets.
Gang Hu,Kui Wang,Jody Groenendyk,Khaled Barakat,Marcin J. Mizianty,Jishou Ruan,Marek Michalak,Lukasz Kurgan +7 more
TL;DR: Using structural human proteome and a novel algorithm for inverse ligand binding prediction, ILbind, a comprehensive set of 100+ putative partners of CSA are determined and it is empirically show that predictive quality of ILbind is better compared with other available predictors for this compound.
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Finding Protein Targets for Small Biologically Relevant Ligands across Fold Space Using Inverse Ligand Binding Predictions
TL;DR: This work proposes a consensus that combines (and outperforms) the two complementary approaches implemented by FINDSITE and SMAP, and demonstrates that these methods successfully find distant targets that belong to structurally different folds compared to the proteins in the input complexes.