L
Lin Lin
Researcher at University of Michigan
Publications - 48
Citations - 6829
Lin Lin is an academic researcher from University of Michigan. The author has contributed to research in topics: Adenocarcinoma & Cancer. The author has an hindex of 31, co-authored 48 publications receiving 6373 citations.
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Journal ArticleDOI
Gene-expression profiles predict survival of patients with lung adenocarcinoma
David G. Beer,Sharon L.R. Kardia,Chiang Ching Huang,Thomas J. Giordano,Albert M. Levin,David E. Misek,Lin Lin,Guoan Chen,Tarek G. Gharib,Dafydd G. Thomas,Michelle L. Lizyness,Rork Kuick,Satoru Hayasaka,Jeremy M. G. Taylor,Mark D. Iannettoni,Mark B. Orringer,Samir M. Hanash +16 more
TL;DR: The identification of a set of genes that predict survival in early-stage lung adenocarcinoma allows delineation of a high-risk group that may benefit from adjuvant therapy.
Journal ArticleDOI
SOX2 is an amplified lineage-survival oncogene in lung and esophageal squamous cell carcinomas
Adam J. Bass,Adam J. Bass,Hideo Watanabe,Hideo Watanabe,Craig H. Mermel,Craig H. Mermel,Soyoung Yu,Sven Perner,Sven Perner,Roeland Verhaak,Roeland Verhaak,So Young Kim,Leslie Wardwell,Pablo Tamayo,Irit Gat-Viks,Alex H. Ramos,Alex H. Ramos,Michele S. Woo,Michele S. Woo,Barbara A. Weir,Barbara A. Weir,Gad Getz,Rameen Beroukhim,Rameen Beroukhim,Michael O'Kelly,Amit Dutt,Amit Dutt,Orit Rozenblatt-Rosen,Piotr Dziunycz,Justin Komisarof,Lucian R. Chirieac,Christopher J. LaFargue,Veit Scheble,Theresia Wilbertz,Changqing Ma,Shilpa Rao,Hiroshi Nakagawa,Douglas B. Stairs,Lin Lin,Thomas J. Giordano,Patrick L. Wagner,John D. Minna,Adi F. Gazdar,Chang-Qi Zhu,Marcia S. Brose,Ivan Cecconello,Ulysses Ribeiro,Suely Kazue Nagahashi Marie,Olav Dahl,Ramesh A. Shivdasani,Ming-Sound Tsao,Mark A. Rubin,Kwok K. Wong,Aviv Regev,William C. Hahn,William C. Hahn,David G. Beer,Anil K. Rustgi,Matthew Meyerson,Matthew Meyerson +59 more
TL;DR: A peak of genomic amplification on chromosome 3q26.33 found in squamous cell carcinomas of the lung and esophagus contains the transcription factor gene SOX2, which is necessary for normal esophageal squamous development, promotes differentiation and proliferation of basal tracheal cells and cooperates in induction of pluripotent stem cells.
Journal ArticleDOI
Exome and whole-genome sequencing of esophageal adenocarcinoma identifies recurrent driver events and mutational complexity
Austin M. Dulak,Petar Stojanov,Petar Stojanov,Petar Stojanov,Shouyong Peng,Shouyong Peng,Michael S. Lawrence,Cameron Fox,Chip Stewart,Santhoshi Bandla,Yu Imamura,Steven E. Schumacher,Steven E. Schumacher,Erica Shefler,Aaron McKenna,Scott L. Carter,Kristian Cibulskis,Andrey Sivachenko,Gordon Saksena,Douglas Voet,Alex H. Ramos,Daniel Auclair,Kristin Thompson,Carrie Sougnez,Robert C. Onofrio,Candace Guiducci,Rameen Beroukhim,Zhongren Zhou,Lin Lin,Jules Lin,Rishindra M. Reddy,Andrew C. Chang,Rodney Landrenau,Arjun Pennathur,Shuji Ogino,James D. Luketich,Todd R. Golub,Stacey Gabriel,Eric S. Lander,Eric S. Lander,Eric S. Lander,David G. Beer,Tony E. Godfrey,Gad Getz,Gad Getz,Adam J. Bass +45 more
Abstract: The incidence of esophageal adenocarcinoma (EAC) has risen 600% over the last 30 years. With a 5-year survival rate of ~15%, the identification of new therapeutic targets for EAC is greatly important. We analyze the mutation spectra from whole-exome sequencing of 149 EAC tumor-normal pairs, 15 of which have also been subjected to whole-genome sequencing. We identify a mutational signature defined by a high prevalence of A>C transversions at AA dinucleotides. Statistical analysis of exome data identified 26 significantly mutated genes. Of these genes, five (TP53, CDKN2A, SMAD4, ARID1A and PIK3CA) have previously been implicated in EAC. The new significantly mutated genes include chromatin-modifying factors and candidate contributors SPG20, TLR4, ELMO1 and DOCK2. Functional analyses of EAC-derived mutations in ELMO1 identifies increased cellular invasion. Therefore, we suggest the potential activation of the RAC1 pathway as a contributor to EAC tumorigenesis.
Exome and whole-genome sequencing of esophageal adenocarcinoma identifies recurrent driver events and mutational complexity
Austin M. Dulak,Petar Stojanov,Petar Stojanov,Petar Stojanov,Shouyong Peng,Shouyong Peng,Michael S. Lawrence,Cameron Fox,Chip Stewart,Santhoshi Bandla,Yu Imamura,Steven E. Schumacher,Steven E. Schumacher,Erica Shefler,Aaron McKenna,Scott L. Carter,Kristian Cibulskis,Andrey Sivachenko,Gordon Saksena,Douglas Voet,Alex H. Ramos,Daniel Auclair,Kristin Thompson,Carrie Sougnez,Robert C. Onofrio,Candace Guiducci,Rameen Beroukhim,Zhongren Zhou,Lin Lin,Jules Lin,Rishindra M. Reddy,Andrew C. Chang,Rodney Landrenau,Arjun Pennathur,Shuji Ogino,James D. Luketich,Todd R. Golub,Stacey Gabriel,Eric S. Lander,Eric S. Lander,Eric S. Lander,David G. Beer,Tony E. Godfrey,Gad Getz,Gad Getz,Adam J. Bass +45 more
TL;DR: A mutational signature defined by a high prevalence of A>C transversions at AA dinucleotides is identified and the potential activation of the RAC1 pathway is suggested as a contributor to EAC tumorigenesis.
Journal ArticleDOI
Gastrointestinal adenocarcinomas of the esophagus, stomach and colon exhibit distinct patterns of genome instability and oncogenesis
Austin M. Dulak,Steven E. Schumacher,Jasper van Lieshout,Yu Imamura,Cameron Fox,Byoungyong Shim,Alex H. Ramos,Gordon Saksena,Sylvan C. Baca,José Baselga,Josep Tabernero,Jordi Barretina,Peter C. Enzinger,Giovanni Corso,Franco Roviello,Lin Lin,Santhoshi Bandla,James D. Luketich,Arjun Pennathur,Matthew Meyerson,Shuji Ogino,Ramesh A. Shivdasani,David G. Beer,Tony E. Godfrey,Rameen Beroukhim,Adam J. Bass +25 more
TL;DR: Genomic features that were common and distinct to various gut-derived adenocarcinomas were defined, potentially informing novel opportunities for targeted therapeutic interventions and suggesting the potential use of genomic amplifications as biomarkers to guide therapy of gastric and esophageal cancers.