M
Margarita Garcia-Hernandez
Researcher at Carnegie Institution for Science
Publications - 12
Citations - 5171
Margarita Garcia-Hernandez is an academic researcher from Carnegie Institution for Science. The author has contributed to research in topics: The Arabidopsis Information Resource & Arabidopsis. The author has an hindex of 10, co-authored 12 publications receiving 4673 citations. Previous affiliations of Margarita Garcia-Hernandez include Stanford University & University of California, Santa Cruz.
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Journal ArticleDOI
The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools
Philippe Lamesch,Tanya Z. Berardini,Donghui Li,David Swarbreck,Christopher Wilks,Rajkumar Sasidharan,Robert J. Muller,Kate Dreher,Debbie L. Alexander,Margarita Garcia-Hernandez,Athikkattuvalasu S. Karthikeyan,Cynthia H. Lee,William D. Nelson,Larry Ploetz,Shanker Singh,April Wensel,Eva Huala +16 more
TL;DR: Recent developments include several new genome releases, progress on functional annotation of the genome and the release of several new tools including Textpresso for Arabidopsis which provides the capability to carry out full text searches on a large body of research literature.
Journal ArticleDOI
The Arabidopsis Information Resource (TAIR): gene structure and function annotation.
David Swarbreck,Christopher Wilks,Philippe Lamesch,Tanya Z. Berardini,Margarita Garcia-Hernandez,Hartmut Foerster,Donghui Li,Tom Meyer,Robert J. Muller,Larry Ploetz,Amie Radenbaugh,Shanker Singh,Vanessa Swing,Christophe Tissier,Peifen Zhang,Eva Huala +15 more
TL;DR: A combination of manual and computational methods were used to generate this release, which contains 27 029 protein-coding genes, 3889 pseudogenes or transposable elements and 1123 ncRNAs (32 041 genes in all, 37 019 gene models).
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The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community
Seung Y. Rhee,William D. Beavis,Tanya Z. Berardini,Guanghong Chen,David A. Dixon,Aisling Doyle,Margarita Garcia-Hernandez,Eva Huala,Gabriel C. Lander,Mary Montoya,Neil A. Miller,Lukas A. Mueller,Suparna Mundodi,Leonore Reiser,Julie Tacklind,Dan C. Weems,Yihe Wu,Iris Xu,Daniel Yoo,Jungwon Yoon,Peifen Zhang +20 more
TL;DR: New information include sequence polymorphisms including alleles, germplasms and phenotypes, Gene Ontology annotations, gene families, protein information, metabolic pathways, gene expression data from microarray experiments and seed and DNA stocks.
Journal ArticleDOI
The Arabidopsis Information Resource (TAIR): a comprehensive database and web-based information retrieval, analysis, and visualization system for a model plant
Eva Huala,Allan W. Dickerman,Margarita Garcia-Hernandez,Danforth Weems,Leonore Reiser,Frank LaFond,David Hanley,Donald Kiphart,Mingzhe Zhuang,Wen Huang,Lukas A. Mueller,Debika Bhattacharyya,Devaki Bhaya,Bruno W. S. Sobral,William D. Beavis,David W. Meinke,Christopher D. Town,Chris Somerville,Seung Y. Rhee +18 more
TL;DR: There is a need for a comprehensive database and information retrieval and analysis system that will provide user-friendly access to Arabidopsis information and the initial steps taken toward realizing these goals are described.
Journal ArticleDOI
Functional Annotation of the Arabidopsis Genome Using Controlled Vocabularies
Tanya Z. Berardini,Suparna Mundodi,Leonore Reiser,Eva Huala,Margarita Garcia-Hernandez,Peifen Zhang,Lukas A. Mueller,Jungwoon Yoon,Aisling Doyle,Gabriel C. Lander,Nick Moseyko,Danny Yoo,Iris Xu,Brandon Zoeckler,Mary Montoya,Neil A. Miller,Dan C. Weems,Seung Y. Rhee +17 more
TL;DR: The process ofArabidopsis functional annotation is described using a variety of data sources and several ways in which this information can be accessed and used to infer knowledge about Arabidopsis and other plant species are illustrated.