M
Mari M. Nakamura
Researcher at Boston Children's Hospital
Publications - 62
Citations - 6833
Mari M. Nakamura is an academic researcher from Boston Children's Hospital. The author has contributed to research in topics: Medicine & Internal medicine. The author has an hindex of 25, co-authored 46 publications receiving 6203 citations. Previous affiliations of Mari M. Nakamura include Stanford University & Vanderbilt University.
Papers
More filters
Journal ArticleDOI
Antisense Transcription in the Mammalian Transcriptome
Shintaro Katayama,Yasuhiro Tomaru,Takeya Kasukawa,Kazunori Waki,Misato Nakanishi,Mari M. Nakamura,Hiromi Nishida,C. C. Yap,M. Suzuki,Jun Kawai,Harukazu Suzuki,Piero Carninci,Yoshihide Hayashizaki,Christine A. Wells,Martin C. Frith,Timothy Ravasi,Ken C Pang,Ken C Pang,Ken C Pang,Jennifer Hallinan,John S. Mattick,David A. Hume,Leonard Lipovich,Serge Batalov,Pär G. Engström,Yumi Mizuno,Mohammad Ali Faghihi,Mohammad Ali Faghihi,Albin Sandelin,Alistair M. Chalk,Salim Mottagui-Tabar,Salim Mottagui-Tabar,Zicai Liang,Boris Lenhard,Claes Wahlestedt,Claes Wahlestedt +35 more
TL;DR: Experimental evidence that perturbation of an antisense RNA can alter the expression of sense messenger RNAs is presented, suggesting that antisense transcription contributes to control of transcriptional outputs in mammals.
Journal ArticleDOI
Genome-wide analysis of mammalian promoter architecture and evolution
Piero Carninci,Albin Sandelin,Boris Lenhard,Boris Lenhard,Shintaro Katayama,Kazuro Shimokawa,Jasmina Ponjavic,Colin A. Semple,Martin S. Taylor,Pär G. Engström,Martin C. Frith,Alistair R. R. Forrest,Wynand Alkema,Sin Lam Tan,Charles Plessy,Rimantas Kodzius,Timothy Ravasi,Timothy Ravasi,Takeya Kasukawa,Shiro Fukuda,Mutsumi Kanamori-Katayama,Yayoi Kitazume,Hideya Kawaji,Chikatoshi Kai,Mari M. Nakamura,Hideaki Konno,Kenji Nakano,Salim Mottagui-Tabar,Salim Mottagui-Tabar,Salim Mottagui-Tabar,Peter Arner,Alessandra Chesi,Stefano Gustincich,Francesca Persichetti,Harukazu Suzuki,Sean M. Grimmond,Christine A. Wells,Valerio Orlando,Claes Wahlestedt,Claes Wahlestedt,Edison T. Liu,Matthias Harbers,Jun Kawai,Vladimir B. Bajic,Vladimir B. Bajic,David A. Hume,Yoshihide Hayashizaki,Yoshihide Hayashizaki +47 more
TL;DR: These tagging methods allow quantitative analysis of promoter usage in different tissues and show that differentially regulated alternative TSSs are a common feature in protein-coding genes and commonly generate alternative N termini.
Journal ArticleDOI
Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage.
Toshiyuki Shiraki,Shinji Kondo,Shintaro Katayama,Kazunori Waki,Takeya Kasukawa,Hideya Kawaji,Rimantas Kodzius,Akira Watahiki,Mari M. Nakamura,Takahiro Arakawa,Shiro Fukuda,Daisuke Sasaki,Anna J. Podhajska,Matthias Harbers,Jun Kawai,Piero Carninci,Yoshihide Hayashizaki +16 more
TL;DR: By analyzing four libraries (brain, cortex, hippocampus, and cerebellum), this work redefined more accurately the TSPs of 11-27% of the analyzed transcriptional units that were hit.
Journal ArticleDOI
CAGE: cap analysis of gene expression
Rimantas Kodzius,Miki Kojima,Hiromi Nishiyori,Mari M. Nakamura,Shiro Fukuda,Michihira Tagami,Daisuke Sasaki,Kengo Imamura,Chikatoshi Kai,Matthias Harbers,Yoshihide Hayashizaki,Piero Carninci +11 more
TL;DR: This paper presents a poster presented at the 2016 Australian Diabetes and Endocrinology Congress, entitled “Vaxine Pty Ltd., Department of Diabetes and endocrinology, Flinders Medical Centre, Bedford Park, Southern Australia 5042, Australia”.
Journal ArticleDOI
Pediatric readmission prevalence and variability across hospitals
Jay G. Berry,Sara L. Toomey,Alan M. Zaslavsky,Ashish K. Jha,Mari M. Nakamura,David J. Klein,Jeremy Y. Feng,Shanna Shulman,Vincent W. Chiang,William D. Kaplan,Matthew Hall,Mark A. Schuster +11 more
TL;DR: Among patients admitted to acute care pediatric hospitals, the rate of unplanned readmissions at 30 days was 6.5%, and there was significant variability in readmission rates across conditions and hospitals.