M
Martin Bonke
Researcher at University of Helsinki
Publications - 9
Citations - 3086
Martin Bonke is an academic researcher from University of Helsinki. The author has contributed to research in topics: Phloem & Xylem. The author has an hindex of 7, co-authored 9 publications receiving 2769 citations. Previous affiliations of Martin Bonke include National Institutes of Health.
Papers
More filters
Journal ArticleDOI
Counting absolute numbers of molecules using unique molecular identifiers
Teemu Kivioja,Anna Vähärautio,Anna Vähärautio,Kasper Karlsson,Martin Bonke,Martin Enge,Sten Linnarsson,Jussi Taipale +7 more
TL;DR: Unique molecular identifiers (UMIs), which make each molecule in a population distinct, are applied to genome-scale human karyotyping and mRNA sequencing in Drosophila melanogaster to improve accuracy of almost any next-generation sequencing method.
Journal ArticleDOI
A novel two-component hybrid molecule regulates vascular morphogenesis of the Arabidopsis root
Ari Pekka Mähönen,Martin Bonke,Leila Kauppinen,Marjukka Riikonen,Philip N. Benfey,Ykä Helariutta +5 more
TL;DR: In the Arabidopsis root meristem, xylem cell lineages are specified early, whereas phloem and procambium are established through a set of asymmetric cell divisions that require the WOODEN LEG (WOL) gene.
Journal ArticleDOI
Genome-Wide Analysis of ETS-Family DNA-Binding In Vitro and In Vivo
Gong-Hong Wei,Gwenael Badis,Michael F. Berger,Teemu Kivioja,Teemu Kivioja,Kimmo Palin,Martin Enge,Martin Bonke,Arttu Jolma,Markku Varjosalo,Andrew R. Gehrke,Jian Yan,Shaheynoor Talukder,Mikko P. Turunen,Mikko Taipale,Hendrik G. Stunnenberg,Esko Ukkonen,Timothy P. Hughes,Martha L. Bulyk,Jussi Taipale,Jussi Taipale +20 more
TL;DR: The results indicate that even relatively small differences in in vitro binding specificity of a TF contribute to site selectivity in vivo, and this work identifies amino‐acid residues that are critical for the differences in specificity between all the classes.
Journal ArticleDOI
APL regulates vascular tissue identity in Arabidopsis
TL;DR: The studies suggest that APL has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development, and that Ectopic APL expression in the vascular bundle inhibitsxylem development.
Journal ArticleDOI
Multiplexed massively parallel SELEX for characterization of human transcription factor binding specificities
Arttu Jolma,Teemu Kivioja,Jarkko Toivonen,Lu Cheng,Gong-Hong Wei,Martin Enge,Mikko Taipale,Juan M. Vaquerizas,Jian Yan,Mikko J. Sillanpää,Martin Bonke,Kimmo Palin,Shaheynoor Talukder,Timothy P. Hughes,Nicholas M. Luscombe,Esko Ukkonen,Jussi Taipale +16 more
TL;DR: A high-throughput method for analyzing transcription factor binding specificity that is based on systematic evolution of ligands by exponential enrichment (SELEX) and massively parallel sequencing is described and reveals unexpected dimeric modes of binding for several factors that were thought to preferentially bind DNA as monomers.