A
Anna Vähärautio
Researcher at University of Helsinki
Publications - 28
Citations - 2113
Anna Vähärautio is an academic researcher from University of Helsinki. The author has contributed to research in topics: Biology & Cancer. The author has an hindex of 11, co-authored 19 publications receiving 1715 citations. Previous affiliations of Anna Vähärautio include Science for Life Laboratory & Karolinska Institutet.
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Journal ArticleDOI
Counting absolute numbers of molecules using unique molecular identifiers
Teemu Kivioja,Anna Vähärautio,Anna Vähärautio,Kasper Karlsson,Martin Bonke,Martin Enge,Sten Linnarsson,Jussi Taipale +7 more
TL;DR: Unique molecular identifiers (UMIs), which make each molecule in a population distinct, are applied to genome-scale human karyotyping and mRNA sequencing in Drosophila melanogaster to improve accuracy of almost any next-generation sequencing method.
Journal ArticleDOI
The Glanville fritillary genome retains an ancient karyotype and reveals selective chromosomal fusions in Lepidoptera
Virpi Ahola,Rainer Lehtonen,Panu Somervuo,Leena Salmela,Patrik Koskinen,Pasi Rastas,Niko Välimäki,Lars Paulin,Jouni Kvist,Niklas Wahlberg,Jaakko Tanskanen,Emily A. Hornett,Emily A. Hornett,Laura Ferguson,Shiqi Luo,Zijuan Cao,Maaike A. de Jong,Maaike A. de Jong,Anne Duplouy,Olli-Pekka Smolander,Heiko Vogel,Rajiv C. McCoy,Kui Qian,Wong Swee Chong,Qin Zhang,Freed Ahmad,Jani K. Haukka,Aruj Joshi,Jarkko Salojärvi,Christopher W. Wheat,Ewald Grosse-Wilde,Daniel S.T. Hughes,Daniel S.T. Hughes,Riku Katainen,Esa Pitkänen,Johannes Ylinen,Robert M. Waterhouse,Robert M. Waterhouse,Robert M. Waterhouse,Mikko P. Turunen,Anna Vähärautio,Anna Vähärautio,Sami P. Ojanen,Alan H. Schulman,Minna Taipale,Minna Taipale,Daniel Lawson,Esko Ukkonen,Veli Mäkinen,Marian R. Goldsmith,Liisa Holm,Petri Auvinen,Mikko J. Frilander,Ilkka Hanski +53 more
TL;DR: The genome of the Glanville fritillary butterfly, a widely recognized model species in metapopulation biology and eco-evolutionary research, is reported, which shows that fusion chromosomes have retained the ancestral chromosome segments and very few rearrangements have occurred across the fusion sites.
Journal ArticleDOI
Mice Lacking a Myc Enhancer That Includes Human SNP rs6983267 Are Resistant to Intestinal Tumors
Inderpreet Sur,Inderpreet Sur,Outi Hallikas,Anna Vähärautio,Anna Vähärautio,Jian Yan,Mikko P. Turunen,Martin Enge,Minna Taipale,Minna Taipale,Auli Karhu,Lauri A. Aaltonen,Jussi Taipale,Jussi Taipale +13 more
TL;DR: It is established that a cancer-associated SNP identified in genome-wide association studies has a functional effect in vivo, and may play a causal role in human cancer, presumably through altered regulation of MYC.
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Integrated data analysis reveals uterine leiomyoma subtypes with distinct driver pathways and biomarkers
Miika Mehine,Eevi Kaasinen,Hanna-Riikka Heinonen,Netta Mäkinen,Kati Kämpjärvi,Nanna Sarvilinna,Mervi Aavikko,Anna Vähärautio,Annukka Pasanen,Ralf Bützow,Oskari Heikinheimo,Jari Sjöberg,Esa Pitkänen,Pia Vahteristo,Lauri A. Aaltonen,Lauri A. Aaltonen +15 more
TL;DR: Transcriptional differences among leiomyomas harboring different genetic drivers, including high mobility group AT-hook 2 (HMGA2) rearrangements, mediator complex subunit 12 (MED12) mutations, biallelic inactivation of fumarate hydratase (FH), and collagen, type IV, alpha 5 andcollagen, typeIV, alpha 6 deletions are explored.
Journal ArticleDOI
Uterine leiomyoma-linked MED12 mutations disrupt mediator-associated CDK activity.
Mikko P. Turunen,Jason M. Spaeth,Salla Keskitalo,Min Ju Park,Teemu Kivioja,Alison D. Clark,Netta Mäkinen,Fangjian Gao,Kimmo Palin,Helka Nurkkala,Anna Vähärautio,Mervi Aavikko,Kati Kämpjärvi,Pia Vahteristo,Chongwoo A. Kim,Lauri A. Aaltonen,Markku Varjosalo,Jussi Taipale,Jussi Taipale,Thomas G. Boyer +19 more
TL;DR: Findings indicate that uterine leiomyoma-linked mutations in MED12 uncouple Cyclin C-CDK8/19 from core Mediator and further identify the MED12/Cyclin C interface as a prospective therapeutic target in CDK8-driven cancers.