M
Michael J. Fero
Researcher at Massachusetts Institute of Technology
Publications - 55
Citations - 2998
Michael J. Fero is an academic researcher from Massachusetts Institute of Technology. The author has contributed to research in topics: Caulobacter crescentus & Gene. The author has an hindex of 22, co-authored 55 publications receiving 2750 citations. Previous affiliations of Michael J. Fero include Stanford University & Howard Hughes Medical Institute.
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Journal ArticleDOI
The External RNA Controls Consortium: a progress report.
Shawn C. Baker,Steven R. Bauer,Richard P. Beyer,James D. Brenton,Bud Bromley,John Burrill,Helen C. Causton,Michael P Conley,Rosalie K. Elespuru,Michael J. Fero,Carole Foy,James C. Fuscoe,Xiaolian Gao,David Gerhold,Patrick Gilles,Federico Goodsaid,Xu Guo,Joe Hackett,Richard D. Hockett,Pranvera Ikonomi,Rafael A. Irizarry,Ernest S. Kawasaki,Tamma Kaysser-Kranich,Kathleen F. Kerr,Gretchen L. Kiser,Walter H. Koch,Kathy Y Lee,Chunmei Liu,Z. Lewis Liu,Anne Bergstrom Lucas,Chitra Manohar,Garry Miyada,Zora Modrusan,Helen Parkes,Raj K. Puri,Laura H. Reid,Thomas B. Ryder,Marc L. Salit,Raymond R. Samaha,Uwe Scherf,Timothy J Sendera,Robert Setterquist,Leming Shi,Richard Shippy,Jesus Soriano,Elizabeth A. Wagar,Janet A. Warrington,Mickey Williams,Frederike Wilmer,Michael A Wilson,Paul K. Wolber,Xiaoning Wu,Renata Zadro +52 more
TL;DR: The External RNA Controls Consortium (ERCC) is developing commonly agreed-upon and tested controls for use in expression assays, a true industry-wide standard control.
Journal ArticleDOI
Gene Expression Patterns in Ovarian Carcinomas
Marci E. Schaner,Douglas T. Ross,Giuseppe Ciaravino,Therese Sørlie,Olga G. Troyanskaya,Maximilian Diehn,Yan C. Wang,George E. Duran,Thomas L. Sikic,Sandra Caldeira,Hanne Skomedal,I-Ping Tu,Tina Hernandez-Boussard,Steven W. Johnson,Peter J. O'Dwyer,Michael J. Fero,Gunnar B. Kristensen,Anne Lise Børresen-Dale,Trevor Hastie,Robert Tibshirani,Matt van de Rijn,Nelson N.H. Teng,Teri A. Longacre,David Botstein,Patrick O. Brown,Branimir I. Sikic +25 more
TL;DR: Although estrogen receptor was expressed in both the ovarian and breast cancers, genes that are coregulated with the estrogen receptor in breast cancers did not show a similar pattern of coexpression in the ovarian cancers.
Journal ArticleDOI
Rheumatoid Arthritis subtypes identified by genomic profiling of peripheral blood cells: Assignment of a type I interferon signature in a subpopulation of patients
T C T M van der Pouw Kraan,Carla A. Wijbrandts,L G M van Baarsen,Alexandre E Voskuyl,François Rustenburg,J.M. Baggen,Saleh M. Ibrahim,Michael J. Fero,B A C Dijkmans,Paul P. Tak,Cornelis L. Verweij +10 more
TL;DR: The IFN type I signature defines a subgroup of patients with RA, with a distinct biomolecular phenotype, characterised by increased activity of the innate defence system, coagulation and complement cascades, and fatty acid metabolism.
Journal ArticleDOI
The essential genome of a bacterium.
Beat Christen,Eduardo Abeliuk,John M Collier,Virginia S. Kalogeraki,Ben Passarelli,John A. Coller,Michael J. Fero,Harley H. McAdams,Lucy Shapiro +8 more
TL;DR: Using hyper‐saturated transposon mutagenesis coupled with high‐throughput sequencing, the essential Caulobacter genome is determined at 8 bp resolution, including 1012 essential genome features: 480 ORFs, 402 regulatory sequences and 130 non‐coding elements, including 90 intergenic segments of unknown function.
Journal ArticleDOI
Gene expression patterns in renal cell carcinoma assessed by complementary DNA microarray.
John P. Higgins,Rajesh Shinghal,Harcharan Gill,Jeffrey H. Reese,Martha K. Terris,Ronald J. Cohen,Michael J. Fero,Jonathan R. Pollack,Matt van de Rijn,James D. Brooks +9 more
TL;DR: Characterization of renal cell carcinomas based on gene expression patterns provides a revised classification of these tumors and has the potential to supply significant biological and clinical insights.