N
Nikolay Cherkasov
Researcher at Saint Petersburg State University
Publications - 12
Citations - 85
Nikolay Cherkasov is an academic researcher from Saint Petersburg State University. The author has contributed to research in topics: Genome-wide association study & Genome. The author has an hindex of 4, co-authored 8 publications receiving 60 citations.
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Journal ArticleDOI
Annotated features of domestic cat - Felis catus genome.
Gaik Tamazian,Serguei Simonov,Pavel Dobrynin,Alexey I. Makunin,Anton Logachev,Aleksey Komissarov,Andrey Shevchenko,Vladimir Brukhin,Nikolay Cherkasov,Anton Svitin,Klaus-Peter Koepfli,Joan Pontius,Carlos A. Driscoll,Kevin Blackistone,Cristina Barr,David Goldman,Agostinho Antunes,Javier Quilez,Belen Lorente-Galdos,Can Alkan,Tomas Marques-Bonet,Marylin Menotti-Raymond,Victor A. David,Kristina Narfström,Stephen J. O'Brien,Stephen J. O'Brien +25 more
TL;DR: The presented genome annotation extends beyond earlier ones by closing gaps of sequence that were unavoidable with previous low-coverage shotgun genome sequencing and offer an important resource for connecting the rich veterinary and natural history of cats to genome discovery.
Journal ArticleDOI
Genome-wide sequence analyses of ethnic populations across Russia
Daria V. Zhernakova,Daria V. Zhernakova,Vladimir Brukhin,Sergey V. Malov,Taras K. Oleksyk,Klaus-Peter Koepfli,Anna S. Zhuk,Pavel Dobrynin,Sergei Kliver,Nikolay Cherkasov,Gaik Tamazian,Mikhail Rotkevich,Ksenia Krasheninnikova,Igor Evsyukov,Sviatoslav Sidorov,Anna Gorbunova,Ekaterina Chernyaeva,Andrey Shevchenko,Sofia Kolchanova,Alexei S. Komissarov,Serguei Simonov,Alexey Antonik,Anton Logachev,Dmitrii E. Polev,Olga A. Pavlova,Andrey S. Glotov,Vladimir Ulantsev,Ekaterina Noskova,Tatyana K. Davydova,Tatyana M. Sivtseva,Svetlana A. Limborska,Oleg Balanovsky,Vladimir L. Osakovsky,Alexey Novozhilov,V. P. Puzyrev,Stephen J. O'Brien,Stephen J. O'Brien +36 more
TL;DR: This study presents a characterization of population-specific genomic variation in Russia with results important for medical genetics and for understanding the dynamic population history of the world's largest country.
Journal ArticleDOI
Genome-Wide Analyses Reveal Gene Influence on HIV Disease Progression and HIV-1C Acquisition in Southern Africa.
Wen Xie,Denis Agniel,Andrey Shevchenko,Sergey V. Malov,Anton Svitin,Nikolay Cherkasov,Marianna K Baum,Adriana Campa,Simani Gaseitsiwe,Hermann Bussmann,Joseph Makhema,Richard Marlink,Vladimir Novitsky,Tun-Hou Lee,Tianxi Cai,Stephen J. O'Brien,Max Essex +16 more
TL;DR: This study uncovered two genetic regions that are significant and have specific effects on HIV-1C acquisition or progression in sub-Saharan Africans, and the result suggested new potential targets for AIDS prevention and treatment.
Patent
Visualization, sharing and analysis of large data sets
TL;DR: In this paper, the authors describe systems and methods for visualization, sharing and analysis of large data sets, where the input data set includes data that can be classified in classification dimensions wherein a first classification dimension is a linear ordering of data entries and a second classification dimension represents analysis criteria, traits of the data entries, or aspects of the entries.
Journal ArticleDOI
Analytical "bake-off" of whole genome sequencing quality for the Genome Russia project using a small cohort for autoimmune hepatitis.
Daria V. Zhernakova,Daria V. Zhernakova,Sergei Kliver,Nikolay Cherkasov,Gaik Tamazian,Mikhail Rotkevich,Ksenia Krasheninnikova,Igor Evsyukov,Sviatoslav Sidorov,Pavel Dobrynin,Andrey A. Yurchenko,Valentin Shimansky,Irina V. Shcherbakova,Andrey S. Glotov,David Valle,Minzhong Tang,Emilia Shin,Kathleen B. Schwarz,Stephen J. O'Brien,Stephen J. O'Brien +19 more
TL;DR: A comparative analysis of whole genome sequencing (WGS) and genotype calling was initiated for ten human genome samples sequenced by St. Petersburg State University Peterhof Sequencing Center and by three commercial sequencing centers outside of Russia, showing high similarities among the sequence quality and called genotypes.