J
Javier Quilez
Researcher at Pompeu Fabra University
Publications - 36
Citations - 2808
Javier Quilez is an academic researcher from Pompeu Fabra University. The author has contributed to research in topics: Genome & Regulation of gene expression. The author has an hindex of 19, co-authored 36 publications receiving 2287 citations. Previous affiliations of Javier Quilez include Spanish National Research Council & Icahn School of Medicine at Mount Sinai.
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Journal ArticleDOI
Elephant shark genome provides unique insights into gnathostome evolution
Byrappa Venkatesh,Byrappa Venkatesh,Alison P. Lee,Vydianathan Ravi,Ashish K. Maurya,Michelle M. Lian,Jeremy B. Swann,Yuko Ohta,Martin F. Flajnik,Yoichi Sutoh,Masanori Kasahara,Shawn Hoon,Vamshidhar Gangu,Scott William Roy,Manuel Irimia,Vladimir Korzh,Igor Kondrychyn,Zhi Wei Lim,Boon Hui Tay,Sumanty Tohari,Kiat Whye Kong,Shufen Ho,Belen Lorente-Galdos,Belen Lorente-Galdos,Javier Quilez,Javier Quilez,Tomas Marques-Bonet,Tomas Marques-Bonet,Brian J. Raney,Philip W. Ingham,Alice Tay,LaDeana W. Hillier,Patrick Minx,Thomas Boehm,Richard K. Wilson,Sydney Brenner,Wesley C. Warren +36 more
TL;DR: The whole-genome analysis of a cartilaginous fish, the elephant shark (Callorhinchus milii), finds that the C. milii genome is the slowest evolving of all known vertebrates, and features extensive synteny conservation with tetrapod genomes, making it a good model for comparative analyses of gnathostome genomes.
Journal ArticleDOI
Gibbon genome and the fast karyotype evolution of small apes
Lucia Carbone,R. Alan Harris,Sante Gnerre,Krishna R. Veeramah,Krishna R. Veeramah,Belen Lorente-Galdos,John Huddleston,John Huddleston,Thomas J. Meyer,Javier Herrero,Christian Roos,Bronwen Aken,Fabio Anaclerio,Nicoletta Archidiacono,Carl Baker,Daniel Barrell,Mark A. Batzer,Kathryn Beal,Antoine Blancher,Craig L. Bohrson,Markus Brameier,Michael S. Campbell,Oronzo Capozzi,Claudio Casola,Giorgia Chiatante,Andrew Cree,Annette Damert,Pieter J. de Jong,Laura Dumas,Marcos Fernandez-Callejo,Paul Flicek,Nina V. Fuchs,Gut I,Gut M,Matthew W. Hahn,Jessica Hernandez-Rodriguez,LaDeana W. Hillier,Robert Hubley,Bianca Ianc,Zsuzsanna Izsvák,Nina G. Jablonski,Laurel Johnstone,Anis Karimpour-Fard,Miriam K. Konkel,Dennis Kostka,Nathan H. Lazar,Sandra L. Lee,Lora Lewis,Yue Liu,Devin P. Locke,Swapan Mallick,Fernando L. Mendez,Fernando L. Mendez,Matthieu Muffato,Lynne V. Nazareth,Kimberly A. Nevonen,Majesta O'Bleness,Cornelia Ochis,Duncan T. Odom,Katherine S. Pollard,Javier Quilez,David Reich,Mariano Rocchi,Gerald G. Schumann,Stephen M. J. Searle,James M. Sikela,Gabriella Skollar,Arian F.A. Smit,Kemal Sonmez,Boudewijn F.H. Ten Hallers,Elizabeth Terhune,Gregg W.C. Thomas,Brygg Ullmer,Mario Ventura,Jerilyn A. Walker,Jeffrey D. Wall,Lutz Walter,Michelle C Ward,Michelle C Ward,Sarah J. Wheelan,Christopher W. Whelan,Christopher W. Whelan,Simon D. M. White,Larry J. Wilhelm,August E. Woerner,Mark Yandell,Baoli Zhu,Michael F. Hammer,Tomas Marques-Bonet,Tomas Marques-Bonet,Evan E. Eichler,Evan E. Eichler,Lucinda Fulton,Catrina Fronick,Donna M. Muzny,Wesley C. Warren,Kim C. Worley,Jeffrey Rogers,Richard K. Wilson,Richard A. Gibbs +99 more
TL;DR: The assembly and analysis of a northern white-cheeked gibbon genome is presented and the propensity for a gibbon-specific retrotransposon (LAVA) to insert into chromosome segregation genes and alter transcription by providing a premature termination site is described, suggesting a possible molecular mechanism for the genome plasticity of the gibbon lineage.
Journal ArticleDOI
Derived immune and ancestral pigmentation alleles in a 7,000-year-old Mesolithic European
Iñigo Olalde,Morten E. Allentoft,Federico Sánchez-Quinto,Gabriel Santpere,Charleston W. K. Chiang,Michael DeGiorgio,Javier Prado-Martinez,Juan Antonio Rodríguez,Simon Rasmussen,Javier Quilez,Oscar Ramirez,Urko M. Marigorta,Marcos Fernandez-Callejo,María E. Prada,Julio Manuel Vidal Encinas,Rasmus Nielsen,Mihai G. Netea,John Novembre,Richard A. Sturm,Pardis C. Sabeti,Tomas Marques-Bonet,Arcadi Navarro,Eske Willerslev,Carles Lalueza-Fox +23 more
TL;DR: An approximately 7,000-year-old Mesolithic skeleton discovered at the La Braña-Arintero site in León, Spain, is sequenceed to retrieve a complete pre-agricultural European human genome, providing evidence that a significant number of derived, putatively adaptive variants associated with pathogen resistance in modern Europeans were already present in this hunter-gatherer.
Journal ArticleDOI
Transcription factors orchestrate dynamic interplay between genome topology and gene regulation during cell reprogramming
Ralph Stadhouders,Ralph Stadhouders,Enrique Vidal,François Serra,Bruno Di Stefano,Bruno Di Stefano,François Le Dily,Javier Quilez,Antonio Gomez,Samuel Collombet,Clara Berenguer,Yasmina Cuartero,Jochen Hecht,Guillaume J. Filion,Miguel Beato,Marc A. Marti-Renom,Thomas Graf +16 more
TL;DR: It is concluded that 3D genome reorganization generally precedes gene expression changes and that removal of locus-specific topological barriers explains why pluripotency genes are activated sequentially during reprogramming.
Journal ArticleDOI
Comparative analysis of the domestic cat genome reveals genetic signatures underlying feline biology and domestication
Michael J. Montague,Gang Li,Barbara Gandolfi,Razib Khan,Bronwen Aken,S. Searle,Patrick Minx,LaDeana W. Hillier,Daniel C. Koboldt,Brian W. Davis,Carlos A. Driscoll,Christina S. Barr,Kevin Blackistone,Javier Quilez,Belen Lorente-Galdos,Tomas Marques-Bonet,Can Alkan,Gregg W.C. Thomas,Matthew W. Hahn,Marilyn Menotti-Raymond,Stephen J. O'Brien,Stephen J. O'Brien,Richard K. Wilson,Leslie A. Lyons,William J. Murphy,Wesley C. Warren +25 more
TL;DR: Insight is provided into how the process of domestication altered the ancestral wildcat genome and build a resource for future disease mapping and phylogenomic studies across all members of the Felidae.