P
Pan Xu
Researcher at Protein Sciences
Publications - 5
Citations - 340
Pan Xu is an academic researcher from Protein Sciences. The author has contributed to research in topics: Data management & Datasets as Topic. The author has an hindex of 3, co-authored 5 publications receiving 195 citations.
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Journal ArticleDOI
Comprehensive identification of peptides in tandem mass spectra using an efficient open search engine.
Hao Chi,Chao Liu,Hao Yang,Wen-Feng Zeng,Long Wu,Wen-Jing Zhou,Rui-Min Wang,Xiu-Nan Niu,Yue-He Ding,Yao Zhang,Yao Zhang,Zhao-Wei Wang,Zhen-Lin Chen,Rui-Xiang Sun,Tao Liu,Guangming Tan,Meng-Qiu Dong,Pan Xu,Peiheng Zhang,Si-Min He +19 more
TL;DR: This work presents a sequence-tag-based search engine, Open-pFind, to identify peptides in an ultra-large search space that includes coeluting peptides, unexpected modifications and digestions and detects peptides with higher precision and speed than seven other search engines.
Journal ArticleDOI
Quantifying the impact of public omics data
Yasset Perez-Riverol,Andrey Zorin,Gaurhari Dass,Manh Tu Vu,Pan Xu,Mihai Glont,Juan Antonio Vizcaíno,Andrew F. Jarnuczak,Robert Petryszak,Peipei Ping,Henning Hermjakob,Henning Hermjakob +11 more
TL;DR: A set of metrics to quantify the attention and impact of biomedical datasets are developed and integrated into the framework of Omics Discovery Index (OmicsDI).
Posted ContentDOI
Open-pFind enables precise, comprehensive and rapid peptide identification in shotgun proteomics
Hao Chi,Chao Liu,Hao Yang,Wen-Feng Zeng,Long Wu,Wen-Jing Zhou,Xiu-Nan Niu,Yue-He Ding,Yao Zhang,Rui-Min Wang,Zhao-Wei Wang,Zhen-Lin Chen,Rui-Xiang Sun,Tao Liu,Guangming Tan,Meng-Qiu Dong,Pan Xu,Peiheng Zhang,Si-Min He +18 more
TL;DR: A practical use of the open search strategy has been realized by Open-pFind for the truly global-scale proteomics experiments of today and in the future.
Journal ArticleDOI
The omics discovery REST interface.
Gaurhari Dass,Manh-Tu Vu,Pan Xu,Enrique Audain,Marc-Phillip Hitz,Björn Grüning,Henning Hermjakob,Henning Hermjakob,Yasset Perez-Riverol +8 more
TL;DR: The Omics DI REST interface is presented to enable programmatic access to any dataset in OmicsDI or all the datasets for a specific provider (database) and clients can perform queries on the API using different metadata information such as sample details, instrumentation, keywords and other provided annotations.
Posted ContentDOI
The Omics Discovery REST interface
Gaurhari Dass,Manh-Tu Vu,Pan Xu,Enrique Audain,Marc-Phillip Hitz,Henning Hermjakob,Yasset Perez-Riverol +6 more
TL;DR: The Omics DI REST interface is presented to enable programmatic access to any dataset in OmicsDI or all the datasets for a specific provider (database) and clients can perform queries on the API using different metadata information such as sample details, instrumentation, keywords and other provided annotations.