A
Andrew F. Jarnuczak
Researcher at European Bioinformatics Institute
Publications - 20
Citations - 8241
Andrew F. Jarnuczak is an academic researcher from European Bioinformatics Institute. The author has contributed to research in topics: Quantitative proteomics & Proteomics. The author has an hindex of 12, co-authored 19 publications receiving 5308 citations. Previous affiliations of Andrew F. Jarnuczak include University of Manchester & Manchester Academic Health Science Centre.
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Journal ArticleDOI
The PRIDE database and related tools and resources in 2019: improving support for quantification data.
Yasset Perez-Riverol,Attila Csordas,Jingwen Bai,Manuel Bernal-Llinares,Suresh Hewapathirana,Deepti J. Kundu,Avinash Inuganti,Johannes Griss,Johannes Griss,Gerhard Mayer,Martin Eisenacher,Enrique Perez,Julian Uszkoreit,Julianus Pfeuffer,Timo Sachsenberg,Şule Yılmaz,Shivani Tiwary,Juergen Cox,Enrique Audain,Mathias Walzer,Andrew F. Jarnuczak,Tobias Ternent,Alvis Brazma,Juan Antonio Vizcaíno +23 more
TL;DR: Key statistics on the current data contents and volume of downloads are outlined, and how PRIDE data are starting to be disseminated to added-value resources including Ensembl, UniProt and Expression Atlas are outlined.
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The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition
Eric W. Deutsch,Attila Csordas,Zhi Sun,Andrew F. Jarnuczak,Yasset Perez-Riverol,Tobias Ternent,David S. Campbell,Manuel Bernal-Llinares,Shujiro Okuda,Shin Kawano,Robert L. Moritz,Jeremy Carver,Mingxun Wang,Mingxun Wang,Yasushi Ishihama,Nuno Bandeira,Nuno Bandeira,Henning Hermjakob,Henning Hermjakob,Juan Antonio Vizcaíno +19 more
TL;DR: The ProteomeXchange Consortium of proteomics resources was formally started in 2011 to standardize data submission and dissemination of mass spectrometry proteomics data worldwide and is supporting a change in culture of the proteomics field.
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The ProteomeXchange consortium in 2020: enabling 'big data' approaches in proteomics.
Eric W. Deutsch,Nuno Bandeira,Nuno Bandeira,Vagisha Sharma,Yasset Perez-Riverol,Jeremy Carver,Jeremy Carver,Deepti J. Kundu,David García-Seisdedos,Andrew F. Jarnuczak,Suresh Hewapathirana,Benjamin Pullman,Benjamin Pullman,Julie Wertz,Julie Wertz,Zhi Sun,Shin Kawano,Shujiro Okuda,Yu Watanabe,Henning Hermjakob,Henning Hermjakob,Brendan MacLean,Michael J. MacCoss,Yunping Zhu,Yasushi Ishihama,Juan Antonio Vizcaíno +25 more
TL;DR: The updated submission guidelines are described and it is demonstrated that the proteomics field is now actively embracing public open data policies and an unprecedented increase of data re-use activities in the field is enabling novel research and new data resources.
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Expression Atlas update: from tissues to single cells
Irene Papatheodorou,Pablo Moreno,Jonathan R. Manning,Alfonso Muñoz-Pomer Fuentes,Nancy George,Silvie Fexova,Nuno A. Fonseca,Anja Füllgrabe,Matthew Green,Ni Huang,Ni Huang,Laura Huerta,Haider Iqbal,Monica Jianu,Suhaib Mohammed,Lingyun Zhao,Andrew F. Jarnuczak,Simon Jupp,John C. Marioni,John C. Marioni,John C. Marioni,Kerstin B. Meyer,Robert Petryszak,Cesar Augusto Prada Medina,Carlos Talavera-López,Sarah A. Teichmann,Juan Antonio Vizcaíno,Alvis Brazma +27 more
TL;DR: Expression Atlas is extended with a new added-value service to display gene expression in single cells with the increased availability of single cell RNA-Seq datasets in the public archives.
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Expression Atlas: gene and protein expression across multiple studies and organisms.
Irene Papatheodorou,Nuno A. Fonseca,Maria Keays,Y. Amy Tang,Elisabet Barrera,Wojciech Bazant,Melissa Burke,Anja Füllgrabe,Alfonso Muñoz-Pomer Fuentes,Nancy George,Laura Huerta,Satu Koskinen,Suhaib Mohammed,Matthew Geniza,Justin Preece,Pankaj Jaiswal,Andrew F. Jarnuczak,Wolfgang Huber,Oliver Stegle,Juan Antonio Vizcaíno,Alvis Brazma,Robert Petryszak +21 more
TL;DR: Novel features and visualizations include the on-the-fly analysis of gene set overlaps and the option to view gene co-expression in experiments investigating constitutive gene expression across tissues or other conditions.