M
Mihai Glont
Researcher at European Bioinformatics Institute
Publications - 17
Citations - 1517
Mihai Glont is an academic researcher from European Bioinformatics Institute. The author has contributed to research in topics: SBML & Manifest file. The author has an hindex of 11, co-authored 17 publications receiving 1084 citations.
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Journal ArticleDOI
BioModels: ten-year anniversary
Vijayalakshmi Chelliah,Nick Juty,Ishan Ajmera,Raza Ali,Marine Dumousseau,Mihai Glont,Michael Hucka,Gaël Jalowicki,Sarah M. Keating,Vincent Knight-Schrijver,Audald Lloret-Villas,Kedar Nath Natarajan,Jean-Baptiste Pettit,Nicolas Rodriguez,Michael Schubert,Sarala M. Wimalaratne,Yangyang Zhao,Henning Hermjakob,Nicolas Le Novère,Camille Laibe +19 more
TL;DR: BioModels as discussed by the authors is a repository of mathematical models of biological processes, which is used to verify both correspondence to the biological process that the model seeks to represent, and reproducibility of the simulation results as described in the corresponding peer-reviewed publication.
Journal ArticleDOI
BioModels—15 years of sharing computational models in life science
Rahuman S Malik-Sheriff,Mihai Glont,Tung V N Nguyen,Krishna Tiwari,Krishna Tiwari,Matthew G Roberts,Ashley Xavier,Manh Tu Vu,Jinghao Men,Matthieu Maire,Sarubini Kananathan,Emma L Fairbanks,Johannes P Meyer,Chinmay Arankalle,Thawfeek M. Varusai,Vincent Knight-Schrijver,Lu Li,Corina Dueñas-Roca,Gaurhari Dass,Sarah M. Keating,Youngmi Park,Nicola Buso,Nicolas Rodriguez,Nicolas Rodriguez,Michael Hucka,Henning Hermjakob,Henning Hermjakob +26 more
TL;DR: BioModels has become the world’s largest repository of curated models and emerged as the third most used data resource after PubMed and Google Scholar among the scientists who use modelling in their research.
Journal ArticleDOI
SBML Level 3: an extensible format for the exchange and reuse of biological models
Sarah M. Keating,Sarah M. Keating,Dagmar Waltemath,Matthias König,Fengkai Zhang,Andreas Dräger,Claudine Chaouiya,Claudine Chaouiya,Frank Bergmann,Andrew Finney,Colin S. Gillespie,Tomáš Helikar,Stefan Hoops,Rahuman S Malik-Sheriff,Stuart L. Moodie,Ion I. Moraru,Chris J. Myers,Aurélien Naldi,Brett G. Olivier,Brett G. Olivier,Brett G. Olivier,Sven Sahle,James C. Schaff,Lucian P. Smith,Lucian P. Smith,Maciej J. Swat,Denis Thieffry,Leandro Watanabe,Darren J. Wilkinson,Darren J. Wilkinson,Michael L. Blinov,Kimberly Begley,James R. Faeder,Harold F. Gómez,Thomas M. Hamm,Yuichiro Inagaki,Wolfram Liebermeister,Allyson L. Lister,Daniel Lucio,Eric Mjolsness,Carole J. Proctor,Karthik Raman,Nicolas Rodriguez,Clifford A. Shaffer,Bruce E. Shapiro,Joerg Stelling,Neil Swainston,Naoki Tanimura,John Wagner,Martin Meier-Schellersheim,Herbert M. Sauro,Bernhard O. Palsson,Hamid Bolouri,Hiroaki Kitano,Akira Funahashi,Henning Hermjakob,John Doyle,Michael Hucka,Richard R. Adams,Nicholas Alexander Allen,Bastian R. Angermann,Marco Antoniotti,Gary D. Bader,Jan Červený,Mélanie Courtot,Christopher Cox,Piero Dalle Pezze,Emek Demir,William S. Denney,Harish Dharuri,Julien Dorier,Dirk Drasdo,Ali Ebrahim,Johannes Eichner,Johan Elf,Lukas Endler,Chris T. Evelo,Christoph Flamm,Ronan M. T. Fleming,Martina Fröhlich,Mihai Glont,Emanuel Gonçalves,Martin Golebiewski,Hovakim Grabski,Alex Gutteridge,Damon Hachmeister,Leonard A. Harris,Benjamin D. Heavner,Ron Henkel,William S. Hlavacek,Bin Hu,Daniel R. Hyduke,Hidde de Jong,Nick Juty,Peter D. Karp,Jonathan R. Karr,Douglas B. Kell,Roland Keller,Ilya Kiselev,Steffen Klamt,Edda Klipp,Christian Knüpfer,Fedor A. Kolpakov,Falko Krause,Martina Kutmon,Camille Laibe,Conor Lawless,Lu Li,Leslie M. Loew,Rainer Machné,Yukiko Matsuoka,Pedro Mendes,Huaiyu Mi,Florian Mittag,Pedro T. Monteiro,Kedar Nath Natarajan,Poul M. F. Nielsen,Tramy Nguyen,Alida Palmisano,Jean-Baptiste Pettit,Thomas Pfau,Robert Phair,Tomas Radivoyevitch,Johann M. Rohwer,Oliver A. Ruebenacker,Julio Saez-Rodriguez,Martin Scharm,Henning Schmidt,Falk Schreiber,Michael Schubert,Roman Schulte,Stuart C. Sealfon,Kieran Smallbone,Sylvain Soliman,Melanie I. Stefan,Devin P. Sullivan,Koichi Takahashi,Bas Teusink,David Tolnay,Ibrahim Vazirabad,Axel von Kamp,Ulrike Wittig,Clemens Wrzodek,Finja Wrzodek,Ioannis Xenarios,Anna Zhukova,Jeremy Zucker +146 more
TL;DR: The latest edition of the Systems Biology Markup Language (SBML) is reviewed, a format designed for this purpose that leverages two decades of SBML and a rich software ecosystem that transformed how systems biologists build and interact with models.
Journal ArticleDOI
Path2Models: large-scale generation of computational models from biochemical pathway maps
Finja Büchel,Finja Büchel,Nicolas Rodriguez,Nicolas Rodriguez,Neil Swainston,Clemens Wrzodek,Tobias Czauderna,Roland Keller,Florian Mittag,Florian Mittag,Michael Schubert,Mihai Glont,Martin Golebiewski,Martijn P. van Iersel,Sarah M. Keating,Matthias Rall,Michael Wybrow,Henning Hermjakob,Michael Hucka,Douglas B. Kell,Wolfgang Müller,Pedro Mendes,Pedro Mendes,Andreas Zell,Claudine Chaouiya,Julio Saez-Rodriguez,Falk Schreiber,Falk Schreiber,Camille Laibe,Andreas Dräger,Andreas Dräger,Nicolas Le Novère,Nicolas Le Novère +32 more
TL;DR: The Path2Models project has automatically generated mathematical models from pathway representations using a suite of freely available software, resulting in more than 140 000 freely available models.
Journal ArticleDOI
COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project
Frank Bergmann,Richard R. Adams,Stuart L. Moodie,Jonathan Cooper,Mihai Glont,Martin Golebiewski,Michael Hucka,Camille Laibe,Andrew K. Miller,David P. Nickerson,Brett G. Olivier,Nicolas Rodriguez,Herbert M. Sauro,Martin Scharm,Stian Soiland-Reyes,Dagmar Waltemath,Florent Yvon,Nicolas Le Novère,Nicolas Le Novère +18 more
TL;DR: It is anticipated that the COMBINE Archive will become a significant help for modellers, as the domain moves to larger, more complex experiments such as multi-scale models of organs, digital organisms, and bioengineering.