Showing papers by "Paul Sajda published in 2008"

Spatiotemporal Linear Decoding of Brain State

Abstract: This review summarizes linear spatiotemporal signal analysis methods that derive their power from careful consideration of spatial and temporal features of skull surface potentials. BCIs offer tremendous potential for improving the quality of life for those with severe neurological disabilities. At the same time, it is now possible to use noninvasive systems to improve performance for time-demanding tasks. Signal processing and machine learning are playing a fundamental role in enabling applications of BCI and in many respects, advances in signal processing and computation have helped to lead the way to real utility of noninvasive BCI.

Spectrum separation resolves partial-volume effect of MRSI as demonstrated on brain tumor scans.

Abstract: Magnetic resonance spectroscopic imaging (MRSI) is currently used clinically in conjunction with anatomical MRI to assess the presence and extent of brain tumors and to evaluate treatment response. Unfortunately, the clinical utility of MRSI is limited by significant variability of in vivo spectra. Spectral profiles show increased variability because of partial coverage of large voxel volumes, infiltration of normal brain tissue by tumors, innate tumor heterogeneity, and measurement noise. We address these problems directly by quantifying the abundance (i.e. volume fraction) within a voxel for each tissue type instead of the conventional estimation of metabolite concentrations from spectral resonance peaks. This ‘spectrum separation’ method uses the non-negative matrix factorization algorithm, which simultaneously decomposes the observed spectra of multiple voxels into abundance distributions and constituent spectra. The accuracy of the estimated abundances is validated on phantom data. The presented results on 20 clinical cases of brain tumor show reduced cross-subject variability. This is reflected in improved discrimination between high-grade and low-grade gliomas, which demonstrates the physiological relevance of the extracted spectra. These results show that the proposed spectral analysis method can improve the effectiveness of MRSI as a diagnostic tool. Copyright © 2008 John Wiley & Sons, Ltd.

Automated tissue segmentation and blind recovery of 1H MRS imaging spectral patterns of normal and diseased human brain

Abstract: Constrained non-negative matrix factorization (cNMF) with iterative data selection is described and demonstrated as a data analysis method for fast and automatic recovery of biochemically meaningful and diagnostically specific spectral patterns of the human brain from 1H MRS imaging (1H MRSI) data. To achieve this goal, cNMF decomposes in vivo multidimensional 1H MRSI data into two non-negative matrices representing (a) the underlying tissue-specific spectral patterns and (b) the spatial distribution of the corresponding metabolite concentrations. Central to the proposed approach is automatic iterative data selection which uses prior knowledge about the spatial distribution of the spectra to remove voxels that are due to artifacts and undesired metabolites/tissues such as the strong lipid and water components. The automatic recovery of diagnostic spectral patterns is demonstrated for long-TE1H MRSI data on normal human brain, multiple sclerosis, and serial brain tumor. The results show the ability of cNMF with iterative data selection to automatically and simultaneously recover tissue-specific spectral patterns and achieve segmentation of normal and diseased human brain tissue, concomitant with simplification of information content. These features of cNMF, which permit rapid recovery, reduction and interpretation of the complex diagnostic information content of large multi-dimensional spectroscopic imaging data sets, have the potential to enhance the clinical utility of in vivo1H MRSI. Copyright © 2007 John Wiley & Sons, Ltd.