P
Pei Zhao
Researcher at Civil Aviation Authority of Singapore
Publications - 7
Citations - 870
Pei Zhao is an academic researcher from Civil Aviation Authority of Singapore. The author has contributed to research in topics: Computer science & Dimensionality reduction. The author has an hindex of 5, co-authored 5 publications receiving 412 citations.
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Journal ArticleDOI
iFeature: a Python package and web server for features extraction and selection from protein and peptide sequences.
Zhen Chen,Pei Zhao,Fuyi Li,André Leier,Tatiana T. Marquez-Lago,Yanan Wang,Geoffrey I. Webb,A. Ian Smith,Roger J. Daly,Kuo-Chen Chou,Jiangning Song +10 more
TL;DR: iFeature is a versatile Python‐based toolkit for generating various numerical feature representation schemes for both protein and peptide sequences, capable of calculating and extracting a comprehensive spectrum of 18 major sequence encoding schemes that encompass 53 different types of feature descriptors.
Journal ArticleDOI
iLearn: an integrated platform and meta-learner for feature engineering, machine-learning analysis and modeling of DNA, RNA and protein sequence data.
Zhen Chen,Pei Zhao,Fuyi Li,Tatiana T. Marquez-Lago,André Leier,Jerico Revote,Yan Zhu,David R. Powell,Tatsuya Akutsu,Geoffrey I. Webb,Kuo-Chen Chou,A. Ian Smith,Roger J. Daly,Jian Li,Jiangning Song +14 more
TL;DR: iLearn is a comprehensive and versatile Python-based toolkit, integrating the functionality of feature extraction, clustering, normalization, selection, dimensionality reduction, predictor construction, best descriptor/model selection, ensemble learning and results visualization for DNA, RNA and protein sequences.
Journal ArticleDOI
Comprehensive review and assessment of computational methods for predicting RNA post-transcriptional modification sites from RNA sequences
Zhen Chen,Pei Zhao,Fuyi Li,Yanan Wang,A. Ian Smith,Geoffrey I. Webb,Tatsuya Akutsu,Abdelkader Baggag,Halima Bensmail,Jiangning Song +9 more
TL;DR: A comprehensive survey on a large collection of 27 state-of-the-art approaches for predicting N1-methyladenosine and N6-methyl adenosine sites and a proposed computational approach called DeepPromise based on deep learning techniques for simultaneous prediction.
Journal ArticleDOI
iLearnPlus: a comprehensive and automated machine-learning platform for nucleic acid and protein sequence analysis, prediction and visualization.
Zhen Chen,Pei Zhao,Chen Li,Fuyi Li,Fuyi Li,Dongxu Xiang,Yong-Zi Chen,Tatsuya Akutsu,Roger J. Daly,Geoffrey I. Webb,Quanzhi Zhao,Lukasz Kurgan,Jiangning Song +12 more
TL;DR: iLearnPlus as discussed by the authors is a machine learning platform with graphical-and web-based interfaces for the construction of machine-learning pipelines for analysis and predictions using nucleic acid and protein sequences.
Journal ArticleDOI
iFeatureOmega: an integrative platform for engineering, visualization and analysis of features from molecular sequences, structural and ligand data sets
Zhen Chen,Xuhan Liu,Pei Zhao,Yanan Wang,Fuyi Li,Tatsuya Akutsu,Chris Bain,Robin B. Gasser,Junzhou Li,Zuoren Yang,Xin Gao,Lukasz Kurgan,Jiangning Song +12 more
TL;DR: Benefits of iFeatureOmega are highlighted based on three research applications, demonstrating how it can be used to accelerate and streamline research in bioinformatics, computational biology, and cheminformatics areas.