P
Phil Febbo
Researcher at Illumina
Publications - 3
Citations - 103
Phil Febbo is an academic researcher from Illumina. The author has contributed to research in topics: Genome & Genetic admixture. The author has an hindex of 2, co-authored 3 publications receiving 71 citations.
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Genomic epidemiology identifies emergence and rapid transmission of SARS-CoV-2 B.1.1.7 in the United States
Nicole L. Washington,Karthik Gangavarapu,Mark Zeller,Alexandre Bolze,Elizabeth T. Cirulli,Kelly M. Schiabor Barrett,Brendan B. Larsen,Catelyn Anderson,Simon R. White,Tyler Cassens,Sharoni Jacobs,Geraint Levan,Jason Nguyen,Jimmy M. Ramirez,Charlotte Rivera-Garcia,Efren Sandoval,Xueqing Wang,David T.W. Wong,Emily Spencer,Refugio Robles-Sikisaka,Ezra Kurzban,Laura D. Hughes,Xianding Deng,Candace Wang,Venice Servellita,Holly Valentine,Peter De Hoff,Phoebe Seaver,Shashank Sathe,Kimberly Gietzen,Brad Sickler,Jay Antico,Kelly Hoon,Jingtao Liu,Aaron Harding,Omid Bakhtar,Tracy Basler,Brett Austin,Magnus Isaksson,Phil Febbo,David M. Becker,Marc Laurent,Eric McDonald,Gene W. Yeo,Rob Knight,Louise C. Laurent,Eileen de Feo,Michael Worobey,Charles Y. Chiu,Marc A. Suchard,James T. Lu,William E. Lee,Kristian G. Andersen,Kristian G. Andersen +53 more
TL;DR: For example, Washington et al. as discussed by the authors investigated the prevalence and growth dynamics of the SARS-CoV-2 variant in the United States (U.S.), tracking it back to its early emergence and onward local transmission.
Posted ContentDOI
High-throughput SARS-CoV-2 and host genome sequencing from single nasopharyngeal swabs
John E. Gorzynski,Hannah N. De Jong,David Amar,Christopher R. Hughes,Alexander G. Ioannidis,Rob Bierman,Darren Liu,Yosuke Tanigawa,Amy Kistler,Jack Kamm,Jaehee Kim,Lorenzo Cappello,Norma Neff,Simone Rubinacci,Olivier Delaneau,Massa J. Shoura,Kinya Seo,Anna Kirillova,Archana Raja,Shirley Sutton,ChunHong Huang,Malaya K. Sahoo,Kalyan C. Mallempati,Gonzalo Montero-Martín,Kazutoyo Osoegawa,David Jimenez-Morales,Nathaniel Watson,Nathan Hammond,Ruchi Joshi,Marcelo Fernandez-Vina,Jeffrey W. Christle,Matthew T. Wheeler,Phil Febbo,Kyle Kai-How Farh,Gary P. Schroth,F Desouza,Julia A. Palacios,Julia Salzman,Benjamin A. Pinsky,Manuel A. Rivas,Carlos Bustamante,Euan A. Ashley,Victoria N. Parikh +42 more
TL;DR: A scalable, high throughput approach to generate high fidelity low pass whole genome and HLA sequencing, viral genomes, and representation of human transcriptome from single nasopharyngeal swabs of COVID19 patients is developed.
Posted ContentDOI
Deconvoluting complex correlates of COVID19 severity with local ancestry inference and viral phylodynamics: Results of a multiomic pandemic tracking strategy
Victoria N. Parikh,Alexander G. Ioannidis,David Jimenez-Morales,John E. Gorzynski,Hannah N. De Jong,Xiran Liu,Jonasel Roque,Victoria P. Cepeda-Espinoza,Kazutoyo Osoegawa,Christopher R. Hughes,Shirley Sutton,Nathan Youlton,Ruchi Joshi,David Amar,Yosuke Tanigawa,Douglas Russo,Justin Wong,Jessie T. Lauzon,Jacob Edelson,Daniel Mas Montserrat,Yongchan Kwon,Simone Rubinacci,Olivier Delaneau,Lorenzo Cappello,Jaehee Kim,Massa J. Shoura,Archana Raja,Nathaniel Watson,Nathan Hammond,Elizabeth Spiteri,Kalyan C. Mallempati,Gonzalo Montero-Martín,Jeffrey W. Christle,Jennifer Kim,Anna Kirillova,Kinya Seo,Yong Huang,Chunli Zhao,Sonia Moreno-Grau,Steven G. Hershman,Karen P. Dalton,Jimmy Zhen,Jack Kamm,Karan D. Bhatt,Alina Isakova,Maurizio Morri,Thanmayi Ranganath,Catherine A. Blish,Angela J. Rogers,Kari C. Nadeau,Samuel Yang,Andra L. Blomkalns,Ruth O'Hara,Norma Neff,Christopher DeBoever,Sándor Szalma,Matthew T. Wheeler,Kyle Kai-How Farh,Gary P. Schroth,Phil Febbo,Francis deSouza,Marcelo Fernandez-Vina,Marcelo Fernandez-Vina,Amy Kistler,Julia A. Palacios,Benjamin A. Pinsky,Carlos Bustamante,Manuel A. Rivas,Euan A. Ashley +68 more
TL;DR: In this article, the authors leverage a pandemic tracking strategy in which they sequence viral and host genomes and transcriptomes from 1,327 nasal swab residuals and integrate them with digital phenotypes from electronic health records.