K
Kristian G. Andersen
Researcher at Scripps Research Institute
Publications - 130
Citations - 16632
Kristian G. Andersen is an academic researcher from Scripps Research Institute. The author has contributed to research in topics: Ebola virus & Zika virus. The author has an hindex of 47, co-authored 112 publications receiving 12040 citations. Previous affiliations of Kristian G. Andersen include University of California, San Diego & Torrey Pines Institute for Molecular Studies.
Papers
More filters
Journal ArticleDOI
The proximal origin of SARS-CoV-2.
Kristian G. Andersen,Kristian G. Andersen,Andrew Rambaut,W. Ian Lipkin,Edward C. Holmes,Robert F. Garry +5 more
TL;DR: It is shown that SARS-CoV-2 is not a laboratory construct or a purposefully manipulated virus, and scenarios by which they could have arisen are discussed.
Journal ArticleDOI
Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak
Stephen K. Gire,Stephen K. Gire,Augustine Goba,Kristian G. Andersen,Kristian G. Andersen,Rachel Sealfon,Rachel Sealfon,Daniel J. Park,Lansana Kanneh,Simbirie Jalloh,Mambu Momoh,Mohamed Fullah,Gytis Dudas,Shirlee Wohl,Shirlee Wohl,Lina M. Moses,Nathan L. Yozwiak,Nathan L. Yozwiak,Sarah M. Winnicki,Sarah M. Winnicki,Christian B. Matranga,Christine M. Malboeuf,James Qu,Adrianne Gladden,Stephen F. Schaffner,Stephen F. Schaffner,Xiao Yang,Pan Pan Jiang,Pan Pan Jiang,Mahan Nekoui,Mahan Nekoui,Andrés Colubri,Moinya Ruth Coomber,Mbalu Fonnie,Alex Moigboi,Michael Gbakie,Fatima K. Kamara,Veronica Tucker,Edwin Konuwa,Sidiki Saffa,Josephine Sellu,Abdul A. Jalloh,Alice Kovoma,James Koninga,Ibrahim Mustapha,Kandeh Kargbo,Momoh Foday,Mohamed Yillah,Franklyn Kanneh,Willie Robert,James L.B. Massally,Sinéad B. Chapman,James Bochicchio,Cheryl I. Murphy,Chad Nusbaum,Sarah Young,Bruce W. Birren,Donald S. Grant,John S. Scheiffelin,Eric S. Lander,Eric S. Lander,Eric S. Lander,Christian T. Happi,Sahr M. Gevao,Andreas Gnirke,Andrew Rambaut,Andrew Rambaut,Robert F. Garry,S. Humarr Khan,Pardis C. Sabeti,Pardis C. Sabeti +70 more
TL;DR: This West African variant likely diverged from central African lineages around 2004, crossed from Guinea to Sierra Leone in May 2014, and has exhibited sustained human-to-human transmission subsequently, with no evidence of additional zoonotic sources.
Journal ArticleDOI
Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples
Joshua Quick,Nathan D. Grubaugh,Steven T. Pullan,Ingra Morales Claro,Andrew D. Smith,Karthik Gangavarapu,Glenn Oliveira,Refugio Robles-Sikisaka,Thomas F. Rogers,Thomas F. Rogers,Nathan Beutler,Dennis R. Burton,Lia Laura Lewis-Ximenez,Jaqueline Goes de Jesus,Marta Giovanetti,Marta Giovanetti,Sarah C. Hill,Allison Black,Allison Black,Trevor Bedford,Miles W. Carroll,Márcio Roberto Teixeira Nunes,Luiz Carlos Junior Alcantara,Ester Cerdeira Sabino,Sally A. Baylis,Nuno R. Faria,Matthew Loose,Jared T. Simpson,Oliver G. Pybus,Kristian G. Andersen,Kristian G. Andersen,Nicholas J. Loman +31 more
TL;DR: A protocol for generating coding-sequence-complete genomes, comprising an online primer design tool, a novel multiplex PCR enrichment protocol, optimized library preparation methods for the portable MinION sequencer and the Illumina range of instruments, and a bioinformatics pipeline for generating consensus sequences.
Journal ArticleDOI
An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar
Nathan D. Grubaugh,Nathan D. Grubaugh,Karthik Gangavarapu,Joshua Quick,Nathaniel L. Matteson,Jaqueline Goes de Jesus,Jaqueline Goes de Jesus,Bradley J. Main,Amanda L Tan,Lauren M. Paul,Doug E. Brackney,Saran Grewal,Nikos Gurfield,Koen K. A. Van Rompay,Sharon Isern,Scott F. Michael,Lark L. Coffey,Nicholas J. Loman,Kristian G. Andersen,Kristian G. Andersen +19 more
TL;DR: The utility of PrimalSeq is demonstrated by measuring Zika and West Nile virus diversity from varied sample types and the accumulation of genetic diversity is influenced by experimental and biological systems.
Journal ArticleDOI
Establishment and cryptic transmission of Zika virus in Brazil and the Americas
Nuno R. Faria,Joshua Quick,Ingra Morales Claro,Julien Thézé,J G de Jesus,Marta Giovanetti,Moritz U. G. Kraemer,Sarah C. Hill,Allison Black,Allison Black,A. C. da Costa,L. C Franco,Sandro Patroca da Silva,C-H Wu,Jayna Raghwani,Simon Cauchemez,L. du Plessis,M. P Verotti,W. K. de Oliveira,Eduardo Hage Carmo,Giovanini E. Coelho,A. C. F. S Santelli,L. C Vinhal,Cláudio Maierovitch Pessanha Henriques,Jared T. Simpson,Matthew Loose,Kristian G. Andersen,Nathan D. Grubaugh,Sneha Somasekar,Charles Y. Chiu,José Esteban Muñoz-Medina,César González-Bonilla,Carlos F. Arias,Lia Laura Lewis-Ximenez,Sally A. Baylis,Alexandre Otavio Chieppe,Shirlei Ferreira Aguiar,Carlos Fernandes,Poliana da Silva Lemos,B. L. S Nascimento,Hamilton Antônio de Oliveira Monteiro,Isadora Cristina de Siqueira,M. G. de Queiroz,T. R. de Souza,João Felipe Bezerra,M. R Lemos,Gavin Pereira,D Loudal,L. C Moura,Rafael Dhalia,Rafael F. O. França,T Magalhães,T Magalhães,T Magalhães,Ernesto T. A. Marques,Thomas Jaenisch,Gabriel Luz Wallau,M. C. de Lima,Vitor H. Nascimento,E. M. de Cerqueira,M. M. de Lima,D. L Mascarenhas,J. P Moura Neto,Anna S. Levin,Tania Regina Tozetto-Mendoza,Silvia Nunes Szente Fonseca,Maria Cassia Mendes-Correa,Flavio Augusto de Pádua Milagres,Aluísio Augusto Cotrim Segurado,Edward C. Holmes,Andrew Rambaut,Andrew Rambaut,Trevor Bedford,Márcio Roberto Teixeira Nunes,Márcio Roberto Teixeira Nunes,Ester Cerdeira Sabino,Luiz Carlos Junior Alcantara,Nicholas J. Loman,Oliver G. Pybus +78 more
TL;DR: The origin and epidemic history of ZIKV in Brazil and the Americas remain poorly understood, despite the value of this information for interpreting observed trends in reported microcephaly and other birth defects as mentioned in this paper.