P
Philip R. Gafken
Researcher at Fred Hutchinson Cancer Research Center
Publications - 54
Citations - 4403
Philip R. Gafken is an academic researcher from Fred Hutchinson Cancer Research Center. The author has contributed to research in topics: Histone code & Proteome. The author has an hindex of 28, co-authored 49 publications receiving 4079 citations.
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Journal ArticleDOI
Dot1p Modulates Silencing in Yeast by Methylation of the Nucleosome Core
TL;DR: DOT1 was originally identified as a gene affecting telomeric silencing in S. cerevisiae, but it is found that Dot1p methylates histone H3 on lysine 79, which maps to the top and bottom of the nucleosome core.
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Histone H3.3 is enriched in covalent modifications associated with active chromatin.
TL;DR: It is proposed that histone modifications are tied to the alternative nucleosome assembly pathways that use primarily H3 at replication forks and H3.3 at actively transcribed genes in a replication-independent manner.
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Myc influences global chromatin structure.
Paul S. Knoepfler,Xiao-yong Zhang,Pei Feng Cheng,Philip R. Gafken,Steven B. McMahon,Robert N. Eisenman +5 more
TL;DR: This study provides the first evidence for regulation of global chromatin structure by an oncoprotein and may explain the broad effects of Myc on cell behavior and tumorigenesis.
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A targeted proteomics-based pipeline for verification of biomarkers in plasma
Jeffrey R. Whiteaker,Chenwei Lin,Jacob J. Kennedy,Liming Hou,Mary Trute,Izabela Sokal,Ping Yan,Regine M. Schoenherr,Lei Zhao,Uliana J. Voytovich,Karen S. Kelly-Spratt,Alexei L. Krasnoselsky,Philip R. Gafken,Jason M. Hogan,Lisa A. Jones,Pei Wang,Lynn M. Amon,Lewis A. Chodosh,Peter S. Nelson,Martin W. McIntosh,Christopher J. Kemp,Amanda G. Paulovich +21 more
TL;DR: The analytical performance of a biomarker identification pipeline based on targeted mass spectrometry would be sufficient for data-dependent prioritization of candidate biomarkers, de novo development of assays and multiplexed biomarker verification and should support the use of an analogous approach with human samples.
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Dynamic changes in histone acetylation regulate origins of DNA replication
TL;DR: It is discovered that acetylation of histone H3 and H4 is dynamically regulated around an origin of replication, at the level of multiply acetylated histones, and it is found that this acetylations is required for efficient origin activation during S phase.