R
Ramy Arnaout
Researcher at Beth Israel Deaconess Medical Center
Publications - 63
Citations - 4169
Ramy Arnaout is an academic researcher from Beth Israel Deaconess Medical Center. The author has contributed to research in topics: Medicine & Viral load. The author has an hindex of 23, co-authored 55 publications receiving 3371 citations. Previous affiliations of Ramy Arnaout include Harvard University & Brigham and Women's Hospital.
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Journal ArticleDOI
Chromosome Conformation Capture Carbon Copy (5C): A massively parallel solution for mapping interactions between genomic elements
Josée Dostie,Todd Richmond,Ramy Arnaout,Rebecca R. Selzer,William Lee,Tracey Honan,Eric D. Rubio,Anton Krumm,Justin Lamb,Chad Nusbaum,Roland Green,Job Dekker +11 more
TL;DR: A high-throughput 3C approach, 3C-Carbon Copy (5C), that employs microarrays or quantitative DNA sequencing using 454-technology as detection methods that should be widely applicable for large-scale mapping of cis- and trans- interaction networks of genomic elements and for the study of higher-order chromosome structure.
Journal ArticleDOI
The landscape of inappropriate laboratory testing: a 15-year meta-analysis.
Ming Zhi,Eric L. Ding,Eric L. Ding,Jesse Theisen-Toupal,Jesse Theisen-Toupal,Julia S. Whelan,Ramy Arnaout,Ramy Arnaout +7 more
TL;DR: The landscape of overutilization varies systematically by clinical setting (initial vs. repeat), test volume, and measurement criteria, and underutilization is also widespread, but understudied.
Journal ArticleDOI
Fast and accurate view classification of echocardiograms using deep learning.
TL;DR: A machine-learning technique is used to teach a computer to recognize different types of video and still images produced by echocardiogram tests, and it is shown that the model could correctly classify what heart anatomy was shown in videos with 98% accuracy.
Journal ArticleDOI
Quantitative deep sequencing reveals dynamic HIV-1 escape and large population shifts during CCR5 antagonist therapy in vivo.
Athe M. N. Tsibris,Bette T. Korber,Bette T. Korber,Ramy Arnaout,Ramy Arnaout,Ramy Arnaout,Carsten Russ,Chien-Chi Lo,Thomas Leitner,Brian Gaschen,James Theiler,Roger Paredes,Roger Paredes,Roger Paredes,Zhaohui Su,Michael Hughes,Roy M. Gulick,Wayne Greaves,Eoin Coakley,Charles Flexner,Chad Nusbaum,Daniel R. Kuritzkes,Daniel R. Kuritzkes +22 more
TL;DR: This work applies high-throughput sequencing to the V3 loop-coding region of env in samples collected from 4 chronically HIV-infected subjects in whom CCR5 antagonist (vicriviroc [VVC]) therapy failed, and results show greater V3 diversity was observed post-selection.
Journal ArticleDOI
High-resolution description of antibody heavy-chain repertoires in humans
Ramy Arnaout,William Lee,Patrick Cahill,Tracey Honan,Todd Sparrow,Michael Weiand,Chad Nusbaum,Klaus Rajewsky,Sergei B. Koralov +8 more
TL;DR: Deep sequencing is used to characterize the diversity of the heavy-chain CDR3 region, the most important contributor to antibody binding specificity, and the constituent V, D, and J segments that comprise it and finds that, during the stepwise D-J and then V-DJ recombination events, the choice of D andJ segments exert some bias on each other; however, it is found that the V segment is essentially independent of both.