R
Raymond T. Yeh
Researcher at Washington University in St. Louis
Publications - 7
Citations - 4559
Raymond T. Yeh is an academic researcher from Washington University in St. Louis. The author has contributed to research in topics: Single-nucleotide polymorphism & Reference genome. The author has an hindex of 6, co-authored 7 publications receiving 4423 citations.
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Journal ArticleDOI
A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms
Ravi Sachidanandam,David Weissman,Steven Schmidt,Jerzy M. Kakol,Lincoln Stein,Gabor T. Marth,Steve Sherry,James C. Mullikin,Beverley J. Mortimore,David Willey,Sarah E. Hunt,Charlotte G. Cole,Penny Coggill,Catherine M. Rice,Zemin Ning,Jane Rogers,David R. Bentley,Pui-Yan Kwok,Elaine R. Mardis,Raymond T. Yeh,Brian Schultz,Lisa Cook,Ruth Davenport,Michael Dante,Lucinda Fulton,LaDeana W. Hillier,Robert H. Waterston,John Douglas Mcpherson,Brian Gilman,Stephen F. Schaffner,William J. Van Etten,David Reich,John M. Higgins,Mark J. Daly,Brendan Blumenstiel,Jennifer Baldwin,Nicole Stange-Thomann,Michael C. Zody,Lauren Linton,Eric S. Lander,David Altshuler +40 more
TL;DR: This high-density SNP map provides a public resource for defining haplotype variation across the genome, and should help to identify biomedically important genes for diagnosis and therapy.
Journal ArticleDOI
Rapid gene mapping in Caenorhabditis elegans using a high density polymorphism map
TL;DR: In this paper, the authors used bulked segregant analysis (BSA) to identify 6,222 single nucleotide polymorphisms (SNPs) modifying restriction enzyme recognition sites ('snip-SNPs'), which are easily detected as RFLPs.
Journal ArticleDOI
A general approach to single-nucleotide polymorphism discovery
Gabor T. Marth,Ian F Korf,Mark Yandell,Raymond T. Yeh,Zhijie Gu,Hamideh Zakeri,Nathan O. Stitziel,LaDeana W. Hillier,Pui-Yan Kwok,Warren Gish +9 more
TL;DR: A unified approach to the discovery of variations in genetic sequence data of arbitrary DNA sources is presented, using the rapidly emerging genomic sequence as a template on which to layer often unmapped, fragmentary sequence data and to use base quality values to discern true allelic variations from sequencing errors.
Journal ArticleDOI
Single-nucleotide polymorphisms in the public domain: how useful are they?
Gabor T. Marth,Raymond T. Yeh,Matthew R Minton,Rachel A Donaldson,Qun Li,Shenghui Duan,Ruth Davenport,Raymond D. Miller,Pui-Yan Kwok +8 more
TL;DR: A survey of more than 1,200 SNPs indicates that more than 80% of TSC and Washington University candidate SNPs are polymorphic and that approximately 50% of the candidateSNPs from these two sources are common SNPs (with minor allele frequency of ≥20%) in any given population.
Journal ArticleDOI
Sequence variations in the public human genome data reflect a bottlenecked population history
Gabor T. Marth,Greg Schuler,Raymond T. Yeh,Ruth Davenport,Richa Agarwala,Deanna M. Church,Sarah J. Wheelan,Jonathan Baker,Ming Ward,Michael Kholodov,Lon Phan,Éva Czabarka,János Murvai,David M. Cutler,Stephen Wooding,Alan R. Rogers,Aravinda Chakravarti,Henry Harpending,Pui-Yan Kwok,Stephen T. Sherry +19 more
TL;DR: The history of the population represented by the public genome sequence is one of collapse followed by a recent phase of mild size recovery, and the inferred times of collapse and recovery are Upper Paleolithic, in agreement with archaeological evidence of the initial modern human colonization of Europe.