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Robert J. Elshire
Researcher at Cornell University
Publications - 17
Citations - 10731
Robert J. Elshire is an academic researcher from Cornell University. The author has contributed to research in topics: Genome & Nested association mapping. The author has an hindex of 16, co-authored 17 publications receiving 9271 citations. Previous affiliations of Robert J. Elshire include AgResearch.
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Journal ArticleDOI
A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species
Robert J. Elshire,Jeffrey C. Glaubitz,Qi-ying Sun,Jesse Poland,Ken Kawamoto,Edward S. Buckler,Edward S. Buckler,Sharon E. Mitchell +7 more
TL;DR: A procedure for constructing GBS libraries based on reducing genome complexity with restriction enzymes (REs) is reported, which is simple, quick, extremely specific, highly reproducible, and may reach important regions of the genome that are inaccessible to sequence capture approaches.
Journal ArticleDOI
TASSEL-GBS: a high capacity genotyping by sequencing analysis pipeline
Jeffrey C. Glaubitz,Terry M. Casstevens,Fei Lu,James Harriman,Robert J. Elshire,Qi-Bin Sun,Edward S. Buckler +6 more
TL;DR: The tassel-gbs pipeline, designed for the efficient processing of raw GBS sequence data into SNP genotypes, is described and benchmark it based upon a large scale, species wide analysis in maize, where the average error rate was reduced to 0.0042.
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Comparative population genomics of maize domestication and improvement
Matthew B. Hufford,Xun Xu,Joost van Heerwaarden,Tanja Pyhäjärvi,Jer Ming Chia,Reed A. Cartwright,Robert J. Elshire,Jeffrey C. Glaubitz,Kate E. Guill,Kate E. Guill,Shawn M. Kaeppler,Jinsheng Lai,Peter L. Morrell,Laura M. Shannon,Chi Song,Nathan M. Springer,Ruth A. Swanson-Wagner,Peter Tiffin,Jun Wang,Gengyun Zhang,John Doebley,Michael D. McMullen,Michael D. McMullen,Doreen Ware,Doreen Ware,Edward S. Buckler,Edward S. Buckler,Shuang Yang,Jeffrey Ross-Ibarra +28 more
TL;DR: A comprehensive assessment of the evolution of modern maize based on the genome-wide resequencing of 75 wild, landrace and improved maize lines finds evidence of recovery of diversity after domestication, likely introgression from wild relatives, and evidence for stronger selection during domestication than improvement.
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A first-generation haplotype map of maize
Michael A. Gore,Jer Ming Chia,Robert J. Elshire,Qi Sun,Elhan S. Ersoz,Bonnie L. Hurwitz,Jason A. Peiffer,Michael D. McMullen,Michael D. McMullen,George Grills,Jeffrey Ross-Ibarra,Doreen Ware,Doreen Ware,Edward S. Buckler,Edward S. Buckler +14 more
TL;DR: A survey of genetic diversity in maize found hundreds of selective sweeps and highly differentiated regions that probably contain loci that are key to geographic adaptation and provide a foundation for uniting breeding efforts across the world and for dissecting complex traits through genome-wide association studies.
Journal ArticleDOI
Switchgrass genomic diversity, ploidy, and evolution: Novel insights from a network-based SNP discovery protocol
Fei Lu,Alexander E. Lipka,Alexander E. Lipka,Jeff C. Glaubitz,Robert J. Elshire,Jerome H. Cherney,Michael D. Casler,Michael D. Casler,Edward S. Buckler,Edward S. Buckler,Denise E. Costich,Denise E. Costich +11 more
TL;DR: This study developed both an association panel and linkage populations for genome-wide association study (GWAS) and genomic selection (GS) of switchgrass, and revealed the fundamentally diploid nature of tetraploid switchgrass.