R
Rodrigo Lopez
Researcher at European Bioinformatics Institute
Publications - 95
Citations - 101183
Rodrigo Lopez is an academic researcher from European Bioinformatics Institute. The author has contributed to research in topics: Web service & InterPro. The author has an hindex of 52, co-authored 94 publications receiving 85815 citations. Previous affiliations of Rodrigo Lopez include Wellcome Trust Sanger Institute & University of Oslo.
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The EBI SRS server—new features
TL;DR: The new additions include: concept of virtual databases, integration of XML databases like the Integrated Resource of Protein Domains and Functional Sites (InterPro), Gene Ontology, MEDLINE, Metabolic pathways, etc., user friendly data representation in 'Nice views', SRSQuickSearch bookmarklets.
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EMBL Nucleotide Sequence Database: developments in 2005.
Guy Cochrane,Philippe Aldebert,Nicola Althorpe,Mikael Andersson,Wendy Baker,Alastair Baldwin,Kirsty Bates,Sumit Bhattacharyya,Paul Browne,Alexandra van den Broek,Matias Castro,Karyn Duggan,Ruth Y. Eberhardt,Nadeem Faruque,John Gamble,Carola Kanz,Tamara Kulikova,Charles Lee,Rasko Leinonen,Quan Lin,Vincent Lombard,Rodrigo Lopez,Michelle McHale,Hamish McWilliam,Gaurab Mukherjee,Francesco Nardone,Maria Pilar Garcia Pastor,Siamak Sobhany,Peter Stoehr,Katerina Tzouvara,Robert Vaughan,Dan Wu,Weimin Zhu,Rolf Apweiler +33 more
TL;DR: The EMBL Nucleotide Sequence Database at the EMBL European Bioinformatics Institute, UK, offers a comprehensive set of publicly available nucleotide sequence and annotation, freely accessible to all.
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The European Nucleotide Archive in 2020.
Peter W. Harrison,Alisha Ahamed,Raheela Aslam,Blaise T. F. Alako,Josephine Burgin,Nicola Buso,Mélanie Courtot,Jun Fan,Dipayan Gupta,Muhammad Haseeb,Sam Holt,Talal Ibrahim,Eugene Ivanov,Suran Jayathilaka,Vishnukumar Balavenkataraman Kadhirvelu,Manish Kumar,Rodrigo Lopez,Simon Kay,Rasko Leinonen,Xin Liu,Colman O’Cathail,Amir Pakseresht,Youngmi Park,Stephane Pesant,Nadim Rahman,Jeena Rajan,Alexey Sokolov,Senthilnathan Vijayaraja,Zahra Waheed,Ahmad Zyoud,Tony Burdett,Guy Cochrane +31 more
TL;DR: The major developments to ENA services and content in 2020 are highlighted, focussing in particular on the recently released updated ENA browser, modernisation of the release process and the authors' data coordination collaborations with specific research communities.
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Priorities for nucleotide trace, sequence and annotation data capture at the Ensembl Trace Archive and the EMBL Nucleotide Sequence Database
Guy Cochrane,Ruth Akhtar,Philippe Aldebert,Nicola Althorpe,Alastair Baldwin,Kirsty Bates,Sumit Bhattacharyya,James K. Bonfield,Lawrence Bower,Paul Browne,Matias Castro,Tony Cox,Fehmi Demiralp,Ruth Y. Eberhardt,Nadeem Faruque,Gemma Hoad,Mikyung Jang,Tamara Kulikova,Alberto Labarga,Rasko Leinonen,Steven Leonard,Quan Lin,Rodrigo Lopez,Dariusz Lorenc,Hamish McWilliam,Gaurab Mukherjee,Francesco Nardone,Sheila Plaister,Stephen J. Robinson,Siamak Sobhany,Robert Vaughan,Dan Wu,Weimin Zhu,Rolf Apweiler,Tim Hubbard,Ewan Birney +35 more
TL;DR: In the face of increasing requirements for nucleotide trace, sequence and annotation data archiving, data capture priority decisions have been taken at the European Nucleotide Archive.
Journal ArticleDOI
SOAP-based services provided by the European Bioinformatics Institute
Sharmila Pillai,Ville Silventoinen,Kimmo Kallio,Martin Senger,Siamak Sobhany,John Tate,S. Velankar,Adel Golovin,Kim Henrick,Peter M. Rice,Peter Stoehr,Rodrigo Lopez +11 more
TL;DR: The European Bioinformatics Institute (EBI) is using SOAP to provide robust data retrieval and data analysis mechanisms to the scientific community and to enhance utilization of the biological resources it already provides.