R
Rose S. Kantor
Researcher at University of California, Berkeley
Publications - 43
Citations - 2019
Rose S. Kantor is an academic researcher from University of California, Berkeley. The author has contributed to research in topics: Medicine & Wastewater. The author has an hindex of 15, co-authored 33 publications receiving 1059 citations. Previous affiliations of Rose S. Kantor include University of California & Planetary Science Institute.
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Journal ArticleDOI
Clades of huge phages from across Earth’s ecosystems
Basem Al-Shayeb,Rohan Sachdeva,Lin-Xing Chen,Fred R. Ward,Patrick Munk,Audra E. Devoto,Cindy J. Castelle,Matthew R. Olm,Keith Bouma-Gregson,Yuki Amano,Christine He,Raphaël Méheust,Brandon Brooks,Alex D. Thomas,Adi Lavy,Paula Matheus-Carnevali,Christine L. Sun,Daniela S. Aliaga Goltsman,Mikayla A. Borton,Allison Sharrar,Alexander L. Jaffe,Tara Colenbrander Nelson,Rose S. Kantor,Ray Keren,Katherine R Lane,Ibrahim F. Farag,Shufei Lei,Kari M. Finstad,Ronald Amundson,Karthik Anantharaman,Jinglie Zhou,Alexander J. Probst,Mary E. Power,Susannah G. Tringe,Wen-Jun Li,Kelly C. Wrighton,Susan T.L. Harrison,Michael J. Morowitz,David A. Relman,Jennifer A. Doudna,Anne-Catherine Lehours,Lesley A. Warren,Jamie H. D. Cate,Joanne M. Santini,Jillian F. Banfield +44 more
TL;DR: Genomic analyses of major clades of huge phages sampled from across Earth’s ecosystems show that they have diverse genetic inventories, including a variety of CRISPR–Cas systems and translation-relevant genes.
Journal ArticleDOI
Expanded diversity of microbial groups that shape the dissimilatory sulfur cycle.
Karthik Anantharaman,Karthik Anantharaman,Bela Hausmann,Sean P. Jungbluth,Sean P. Jungbluth,Rose S. Kantor,Adi Lavy,Lesley A. Warren,Michael S. Rappé,Michael Pester,Alexander Loy,Brian C. Thomas,Jillian F. Banfield,Jillian F. Banfield,Jillian F. Banfield +14 more
TL;DR: It is concluded that current functional predictions based on phylogeny significantly underestimate the extent of sulfate/sulfite reduction across Earth’s ecosystems.
Journal ArticleDOI
Small Genomes and Sparse Metabolisms of Sediment-Associated Bacteria from Four Candidate Phyla
Rose S. Kantor,Kelly C. Wrighton,Kim M. Handley,Itai Sharon,Laura A. Hug,Cindy J. Castelle,Brian C. Thomas,Jillian F. Banfield +7 more
TL;DR: Deep sequenced microbial communities from acetate-stimulated aquifer sediment are deeply sequenced to recover the complete and essentially complete genomes of single representatives of the candidate phyla SR1, WWE3, TM7, and OD1, revealing metabolic capabilities on the basis of gene content.
Journal ArticleDOI
Genome Sequencing of Sewage Detects Regionally Prevalent SARS-CoV-2 Variants.
Alexander Crits-Christoph,Rose S. Kantor,Matthew R. Olm,Oscar N. Whitney,Basem Al-Shayeb,Yue Clare Lou,Avi I. Flamholz,Lauren C Kennedy,Hannah D. Greenwald,Adrian Hinkle,Jonathan Hetzel,Sara Spitzer,Jeffery Koble,Asako Tan,Fred Hyde,Gary P. Schroth,Scott Kuersten,Jillian F. Banfield,Kara L. Nelson +18 more
TL;DR: In this paper, the authors used a pipeline for single nucleotide variant calling in a metagenomic context, characterized minor SARS-CoV-2 alleles in the wastewater and detected viral genotypes which were also found within clinical genomes throughout California.
Posted ContentDOI
Genome sequencing of sewage detects regionally prevalent SARS-CoV-2 variants
Alexander Crits-Christoph,Rose S. Kantor,Matthew R. Olm,Oscar N. Whitney,Basem Al-Shayeb,Yue Clare Lou,Avi I. Flamholz,Lauren C Kennedy,Hannah D. Greenwald,Adrian Hinkle,Jonathan Hetzel,Sara Spitzer,Jeffery Koble,Asako Tan,Fred Hyde,Gary P. Schroth,Scott Kuersten,Jillian F. Banfield,Kara L. Nelson +18 more
TL;DR: In this article, the authors used a pipeline for single nucleotide variant (SNV) calling in a metagenomic context, characterized minor SARS-CoV-2 alleles in the wastewater and detected viral genotypes which were also found within clinical genomes throughout California.