T
Tetsutaro Hayashi
Publications - 71
Citations - 3132
Tetsutaro Hayashi is an academic researcher. The author has contributed to research in topics: Medicine & Planarian. The author has an hindex of 23, co-authored 46 publications receiving 2336 citations.
Papers
More filters
Journal ArticleDOI
Quartz-Seq: a highly reproducible and sensitive single-cell RNA sequencing method, reveals non-genetic gene-expression heterogeneity
Yohei Sasagawa,Itoshi Nikaido,Tetsutaro Hayashi,Hiroki Danno,Kenichiro D. Uno,Takeshi Imai,Hiroki R. Ueda +6 more
TL;DR: It is shown that single-cell Quartz-Seq can quantitatively detect various kinds of non-genetic cellular heterogeneity, and can detect different cell types and different cell-cycle phases of a single cell type.
Journal ArticleDOI
The mRNA-like noncoding RNA Gomafu constitutes a novel nuclear domain in a subset of neurons
Masamitsu Sone,Tetsutaro Hayashi,Hiroshi Tarui,Kiyokazu Agata,Masatoshi Takeichi,Shinichi Nakagawa +5 more
TL;DR: It is proposed that Gomafu RNA represents a novel family of mRNA-like noncoding RNA that constitutes a cell-type-specific component of the nuclear matrix and remains intact after nuclear matrix preparation.
Journal ArticleDOI
SCODE: an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation.
Hirotaka Matsumoto,Hisanori Kiryu,Chikara Furusawa,Minoru S.H. Ko,Shigeru B. H. Ko,Norio Gouda,Tetsutaro Hayashi,Itoshi Nikaido +7 more
TL;DR: The novel and efficient algorithm SCODE is developed to infer regulatory networks from single‐cell RNA‐Seq during differentiation, based on ordinary differential equations, and it is confirmed that SCODE can reconstruct observed expression dynamics.
Journal ArticleDOI
Benchmarking Single-Cell RNA Sequencing Protocols for Cell Atlas Projects
Elisabetta Mereu,Atefeh Lafzi,Catia Moutinho,Christoph Ziegenhain,Davis J. McCarthy,Davis J. McCarthy,Adrián Álvarez-Varela,Eduard Batlle,Sagar,Dominic Grün,Julia K. Lau,Stéphane C. Boutet,Chad Sanada,Aik Ooi,Robert C. Jones,Kelly Kaihara,Chris Brampton,Yasha Talaga,Yohei Sasagawa,Kaori Tanaka,Tetsutaro Hayashi,Caroline Braeuning,Cornelius Fischer,Sascha Sauer,Timo Trefzer,Christian Conrad,Xian Adiconis,Lan T. Nguyen,Aviv Regev,Aviv Regev,Aviv Regev,Joshua Z. Levin,Swati Parekh,Aleksandar Janjic,Lucas E. Wange,Johannes W. Bagnoli,Wolfgang Enard,Marta Gut,Rickard Sandberg,Itoshi Nikaido,Ivo Gut,Oliver Stegle,Oliver Stegle,Holger Heyn +43 more
TL;DR: In this paper, a multicenter study comparing 13 commonly used scRNA-seq and single-nucleus RNA-seq protocols applied to a heterogeneous reference sample resource was conducted.
Journal ArticleDOI
Isolation of planarian X-ray-sensitive stem cells by fluorescence-activated cell sorting.
TL;DR: A new method to isolate the planarian adult stem cells as X‐ray‐sensitive cell populations by fluorescence‐activated cell sorting (FACS) is described, which may provide a key tool for advancing the understanding of the stem cell system in planarians.