V
Ville Uski
Researcher at Rutherford Appleton Laboratory
Publications - 14
Citations - 467
Ville Uski is an academic researcher from Rutherford Appleton Laboratory. The author has contributed to research in topics: SIMBAD & Medicine. The author has an hindex of 4, co-authored 11 publications receiving 282 citations.
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Journal ArticleDOI
CCP4i2: the new graphical user interface to the CCP4 program suite.
Liz Potterton,Jon Agirre,Charles Ballard,Kevin Cowtan,Eleanor J. Dodson,Phil Evans,Huw T. Jenkins,Ronan M. Keegan,Eugene Krissinel,Kyle Stevenson,Andrey Lebedev,Stuart McNicholas,Robert A. Nicholls,Martin E.M. Noble,Navraj S. Pannu,Christian Roth,George M. Sheldrick,Pavol Skubák,Johan P. Turkenburg,Ville Uski,Frank von Delft,David G. Waterman,Keith S. Wilson,Martyn Winn,Marcin Wojdyr +24 more
TL;DR: CCP4i2 is a graphical user interface to the CCP4 (Collaborative Computational Project, Number 4) software suite and a Python language framework for software automation.
Journal ArticleDOI
Distributed computing for macromolecular crystallography
TL;DR: The paper describes recent CCP4 initiatives and projects aimed at bringing software and data services which utilize distributed computational resources to users.
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Recent developments in MrBUMP: better search-model preparation, graphical interaction with search models, and solution improvement and assessment
Ronan M. Keegan,Stuart McNicholas,Jens M. H. Thomas,Adam J. Simpkin,Felix Simkovic,Ville Uski,Charles Ballard,Martyn Winn,Keith S. Wilson,Daniel J. Rigden +9 more
TL;DR: New developments in the MrBUMP pipeline, including graphical interaction with search models using CCP4mg and the use of ensemble search models, are reported.
Journal ArticleDOI
SIMBAD: a sequence-independent molecular-replacement pipeline.
Adam J. Simpkin,Felix Simkovic,Jens M. H. Thomas,Martin Savko,Andrey Lebedev,Ville Uski,Charles Ballard,Marcin Wojdyr,Rui Wu,Ruslan Sanishvili,Yibin Xu,Yibin Xu,María-Natalia Lisa,Alejandro Buschiazzo,William Shepard,Daniel J. Rigden,Ronan M. Keegan,Ronan M. Keegan +17 more
TL;DR: SIMBAD is a sequence-independent molecular-Replacement pipeline for solving difficult molecular-replacement cases where contaminants have been crystallized and can be used to find structurally related search models where no obvious homologue can be found through sequence-based searching.
Journal ArticleDOI
ConPlot: web-based application for the visualization of protein contact maps integrated with other data.
Filomeno Sánchez Rodríguez,Shahram Mesdaghi,Adam J. Simpkin,José Javier Burgos-Mármol,David L Murphy,Ville Uski,Ronan M. Keegan,Daniel J. Rigden +7 more
TL;DR: Conplot as discussed by the authors is a web-based application for convenient display and analysis of contact maps and distograms, which can therefore use the empty space near the contact map diagonal to display multiple coloured tracks representing other sequence-based predictions.