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A BAYESIAN HIERARCHICAL FRAMEWORK FOR SPATIAL MODELING OF fMRI DATA

TLDR
This work applies the Bayesian hierarchical model to two novel fMRI data sets: one considering inhibitory control in cocaine-dependent men and the second considering verbal memory in subjects at high risk for Alzheimer's disease.
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This article is published in NeuroImage.The article was published on 2008-01-01 and is currently open access. It has received 136 citations till now. The article focuses on the topics: Bayesian hierarchical modeling & Region of interest.

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Journal ArticleDOI

The Statistical Analysis of fMRI Data

TL;DR: The analysis of fMRI data is discussed, from the initial acquisition of the raw data to its use in locating brain activity, making inference about brain connectivity and predictions about psychological or disease states.
Journal ArticleDOI

The Statistical Analysis of fMRI Data.

TL;DR: In this paper, the authors discuss the analysis of fMRI data, from the initial acquisition of the raw data to its use in locating brain activity, making inference about brain connectivity and predictions about psychological or disease states.
Journal ArticleDOI

Sparse representation of whole-brain fMRI signals for identification of functional networks.

TL;DR: Experimental results have shown that this novel methodology can uncover multiple functional networks that can be well characterized and interpreted in spatial, temporal and frequency domains based on current brain science knowledge.
Journal ArticleDOI

Neuroeconomics: a critical reconsideration

TL;DR: The authors argue that neuroscience can be a valuable field, but not the way it is being developed and "sold" now, which is not a bad thing or a reason to stop the effort, but it does point to the need for a serious reconsideration of what neuroeconomics is and what passes for explanation in this literature.
Journal ArticleDOI

Pooling fMRI Data: Meta-Analysis, Mega-Analysis and Multi-Center Studies

TL;DR: Current limitations in function-location brain mapping and how data-pooling can be used to remediate them are reviewed, with particular attention to power aggregation and mitigation of false positive results.
References
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Automated Anatomical Labeling of Activations in SPM Using a Macroscopic Anatomical Parcellation of the MNI MRI Single-Subject Brain

TL;DR: An anatomical parcellation of the spatially normalized single-subject high-resolution T1 volume provided by the Montreal Neurological Institute was performed and it is believed that this tool is an improvement for the macroscopical labeling of activated area compared to labeling assessed using the Talairach atlas brain.
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Statistical parametric maps in functional imaging: A general linear approach

TL;DR: In this paper, the authors present a general approach that accommodates most forms of experimental layout and ensuing analysis (designed experiments with fixed effects for factors, covariates and interaction of factors).
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Whole brain segmentation: automated labeling of neuroanatomical structures in the human brain.

TL;DR: In this paper, a technique for automatically assigning a neuroanatomical label to each voxel in an MRI volume based on probabilistic information automatically estimated from a manually labeled training set is presented.
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Automatically Parcellating the Human Cerebral Cortex

TL;DR: A technique for automatically assigning a neuroanatomical label to each location on a cortical surface model based on probabilistic information estimated from a manually labeled training set is presented, comparable in accuracy to manual labeling.
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The Neural Basis of Addiction: A Pathology of Motivation and Choice

TL;DR: Cellular adaptations in prefrontal glutamatergic innervation of the accumbens promote the compulsive character of drug seeking in addicts by decreasing the value of natural rewards, diminishing cognitive control (choice), and enhancing glutamatorgic drive in response to drug-associated stimuli.
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Frequently Asked Questions (10)
Q1. What are the contributions mentioned in the paper "A bayesian hierarchical framework for spatial modeling of fmri data" ?

In this work the authors present a Bayesian extension of voxel-level analyses that offers several notable benefits. Secondly, an unstructured variance/covariance for regional mean parameters allows for the study of inter-regional functional connectivity, provided enough subjects are available to allow for accurate estimation. The authors perform estimation for their model using Markov Chain Monte Carlo ( MCMC ) techniques implemented via Gibbs sampling which, despite the high throughput nature of the data, can be executed quickly ( less than 30 minutes ). The authors apply their Bayesian hierarchical model to two novel fMRI data sets: one considering inhibitory control ∗Department of Biostatistics, The Rollins School of Public Health †Department of Biostatistics, Johns Hopkins Bloomberg School of Public Health ‡Department of Psychiatry and Behavioral Sciences, Johns Hopkins Medical Institutions §Department of Psychiatry and Behavioral Sciences, Emory University 

Functional neuroimaging techniques enable in vivo investigations into the neural basis of human cognition, emotions, and behaviors. 

The main advantages that their proposed spatial model yields are that it: 1) provides a novel approach to uncover prominent functional connections between remote voxels, 2) often provides higher accuracy and increased statistical power for inferences regarding task-related changes in brain activity by adjusting for spatial associations in the data, 3) extends the modeling assumptions underlying previously applied methods from the limited amount of research in this area, and 4) establishes a unified framework that yields results for voxel-specific inferences, regional or VOI inferences, and functional connectivity. 

To avoid introducing prior information that does not seem physiologically plausible and that is not supported by the data, the authors consider small to moderate departures from the sample covariance matrix in their sensitivity analyses. 

In the right hippocampus and in the left lateral orbital frontal cortex, the cocaine addicts demonstrate a decrease in activity following treatment, while the controls reveal increased activity. 

Applying MCMC methods in their context is complicated by the massive amount of data, the vast number of spatial locations, and the large number of parameters. 

It is important to note that the voxel-level inferences provided by their approach account for prominent spatial correlations or functional connections in the brain, as detected by their Bayesian model. 

Woolrich et al. (2004b) propose a Bayesian modeling framework for fMRI data allowing both separable and nonseparable spatio-temporal models. 

Subjects were defined as at-risk for Alzheimer’s disease by having an autopsy confirmed affected parent and at least one additional clinically diagnosed first degree relative. 

The authors can easily estimate these regional parameters using samples from the joint posterior distribution for all of their model parameters, taking into account the potential correlations between voxel-specific parameters from the region.