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A flexible implementation of frozen-density embedding for use in multilevel simulations.

TLDR
A new implementation of frozen‐density embedding (FDE) in the Amsterdam Density Functional (ADF) program package is presented and it is shown how this flexible setup can facilitate the application of FDE in multilevel simulations.
Abstract
A new implementation of frozen-density embedding (FDE) in the Amsterdam Density Functional (ADF) program package is presented. FDE is based on a subsystem formulation of density-functional theory (DFT), in which a large system is assembled from an arbitrary number of subsystems, which are coupled by an effective embedding potential. The new implementation allows both an optimization of all subsystems as a linear-scaling alternative to a conventional DFT treatment, the calculation of one active fragment in the presence of a frozen environment, and intermediate setups, in which individual subsystems are fully optimized, partially optimized, or completely frozen. It is shown how this flexible setup can facilitate the application of FDE in multilevel simulations. © 2007 Wiley Periodicals, Inc. J Comput Chem, 2008

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Subsystem density-functional theory

TL;DR: Subsystem density functional theory (subsystem DFT) as mentioned in this paper is a powerful alternative to Kohn-Sham DFT for quantum chemical calculations of complex systems, which exploits the idea of representing the total electron density as a sum of subsystem densities.
Journal ArticleDOI

Charge Transport in Molecular Materials: An Assessment of Computational Methods

TL;DR: This review article aims at providing a compendium of the available methods, their theoretical foundations, and their ranges of validity for organic molecular crystals, and illustrates these through applications found in the literature.
Journal ArticleDOI

Frozen-Density Embedding Strategy for Multilevel Simulations of Electronic Structure.

TL;DR: Modeling properties of chemical species and chemical reactions requires usually the quantum-mechanical level of description, and nonlocal embedding operators based on either transferrable pseudopotentials or frozen orbitals obtained from localization procedures have been developed in many groups.
Journal ArticleDOI

Accurate frozen-density embedding potentials as a first step towards a subsystem description of covalent bonds.

TL;DR: In this paper, a method for numerical calculation of accurate references for the kinetic energy component of the embedding potential is presented. But the method is limited to a set of model systems, where the subsystems are connected by hydrogen bonds of various strength.
Journal ArticleDOI

Quantum-chemical embedding methods for treating local electronic excitations in complex chemical systems

TL;DR: In this paper, a review of quantum-chemical approaches for modeling the electronic excitation phenomena underlying many important chemical, biological, and technological processes is presented, using a formulation based on the formally exact frozen-density embedding theory as their starting point.
References
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Journal ArticleDOI

VMD: Visual molecular dynamics

TL;DR: VMD is a molecular graphics program designed for the display and analysis of molecular assemblies, in particular biopolymers such as proteins and nucleic acids, which can simultaneously display any number of structures using a wide variety of rendering styles and coloring methods.
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Density-functional exchange-energy approximation with correct asymptotic behavior.

TL;DR: This work reports a gradient-corrected exchange-energy functional, containing only one parameter, that fits the exact Hartree-Fock exchange energies of a wide variety of atomic systems with remarkable accuracy, surpassing the performance of previous functionals containing two parameters or more.
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Comparison of simple potential functions for simulating liquid water

TL;DR: In this article, the authors compared the Bernal Fowler (BF), SPC, ST2, TIPS2, TIP3P, and TIP4P potential functions for liquid water in the NPT ensemble at 25°C and 1 atm.
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Density-functional approximation for the correlation energy of the inhomogeneous electron gas

TL;DR: Numerical results for atoms, positive ions, and surfaces are close to the exact correlation energies, with major improvements over the original LM approximation for the ions and surfaces.
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Chemistry with ADF

TL;DR: The “Activation‐strain TS interaction” (ATS) model of chemical reactivity is reviewed as a conceptual framework for understanding how activation barriers of various types of reaction mechanisms arise and how they may be controlled, for example, in organic chemistry or homogeneous catalysis.
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