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Application of Molecular Microbiology Techniques in Bioremediation of Hydrocarbons and Other Pollutants

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TLDR
The application of molecular microbiology techniques Studying microbial populations in polluted sites without the need for culturing has led to the discovery of novel and unrecog nized populations.
Abstract
Molecular microbiology techniques have revolutionized microbial ecology by paving the way for rapid, high -throughput methods for culture -independent assessment and exploitation of microbial communities present in complex ecosystems like crude oil/hydrocarbon polluted soil. The soil microbial community is relatively diversewith a high level of prokaryotic diversity. This soil species pool represents a gold mine for genes involved in the biodegradation of different classes of pollutants. Currently, less than 1% of this diversity is culturable by traditional cultivation techniques. The application of molecular microbiology techniquesinstudyingmicrobial populations in polluted sites without the need for culturing has led to the discovery of novel and unrecog nized

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Microbial Population Changes During Bioremediation of an Experimental Oil Spill

TL;DR: PLFA analysis indicated that by week 14 the microbial community structures of the oiled plots were becoming similar to those of the unoiled controls from the same time point, but DGGE analysis suggested that major differences in the bacterial communities remained.
Journal ArticleDOI

Metatranscriptome analysis deciphers multifunctional genes and enzymes linked with the degradation of aromatic compounds and pesticides in the wheat rhizosphere

TL;DR: Abundance of the transcripts related to the degradation of aromatic amin compounds, carbazoles, benzoates, naphthalene, ketoadipate pathway, phenols, biphenyls and xenobiotics indicated abundant degradation capabilities in the soils.
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Culture-dependent characterization of hydrocarbon utilizing bacteria in selected crude oil-impacted sites in Bodo, Ogoniland, Nigeria

TL;DR: In this paper, an investigation was carried out to characterize microbial communities in selected crude oil polluted sites in Bodo community, Gokana Local Government Area of Rivers State, Nigeria, which revealed that there is a high population of active indigenous hydrocarbon utilizing bacteria which can be monitored and enhanced to bring about bioremediation in the study area.

Full Length Research Paper - Enhancement of recovery of residual oil using a biosurfactant slug

TL;DR: Results suggest that biosurfactant produced by Pseudomonas species is a potential “candidate” for microbially enhanced oil recovery.
Journal ArticleDOI

Molecular characterization of autochthonous hydrocarbon utilizing bacteria in oil-polluted sites at Bodo Community, Ogoni land, Niger Delta, Nigeria

TL;DR: It is highly recommended that16S rRNA-gene-based techniques be used when studying the bacterial community diversity and dynamics in oil-polluted ecosystems in order to fully describe the active microorganisms involved in hydrocarbon degradation.
References
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Journal ArticleDOI

Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA

TL;DR: Analysis of the genomic DNA from a bacterial biofilm grown under aerobic conditions suggests that sulfate-reducing bacteria, despite their anaerobicity, were present in this environment.
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Quantitative monitoring of gene expression patterns with a complementary DNA microarray.

TL;DR: A high-capacity system was developed to monitor the expression of many genes in parallel by means of simultaneous, two-color fluorescence hybridization, which enabled detection of rare transcripts in probe mixtures derived from 2 micrograms of total cellular messenger RNA.
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Phylogenetic identification and in situ detection of individual microbial cells without cultivation.

TL;DR: Phylogenetic analysis of the retrieved rRNA sequence of an uncultured microorganism reveals its closest culturable relatives and may, together with information on the physicochemical conditions of its natural habitat, facilitate more directed cultivation attempts.
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Real time quantitative PCR.

TL;DR: Unlike other quantitative PCR methods, real-time PCR does not require post-PCR sample handling, preventing potential PCR product carry-over contamination and resulting in much faster and higher throughput assays.
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Exploring the Metabolic and Genetic Control of Gene Expression on a Genomic Scale

TL;DR: DNA microarrays containing virtually every gene of Saccharomyces cerevisiae were used to carry out a comprehensive investigation of the temporal program of gene expression accompanying the metabolic shift from fermentation to respiration, and the expression patterns of many previously uncharacterized genes provided clues to their possible functions.
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