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Fully Bayesian experimental design for pharmacokinetic studies

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TLDR
In this paper, the authors explore the use of Laplace approximations in the design setting to overcome the drawback that importance sampling will tend to break down if there is a reasonable number of experimental observations and/or the model parameter is high dimensional.
Abstract
Utility functions in Bayesian experimental design are usually based on the posterior distribution. When the posterior is found by simulation, it must be sampled from for each future data set drawn from the prior predictive distribution. Many thousands of posterior distributions are often required. A popular technique in the Bayesian experimental design literature to rapidly obtain samples from the posterior is importance sampling, using the prior as the importance distribution. However, importance sampling will tend to break down if there is a reasonable number of experimental observations and/or the model parameter is high dimensional. In this paper we explore the use of Laplace approximations in the design setting to overcome this drawback. Furthermore, we consider using the Laplace approximation to form the importance distribution to obtain a more efficient importance distribution than the prior. The methodology is motivated by a pharmacokinetic study which investigates the effect of extracorporeal membrane oxygenation on the pharmacokinetics of antibiotics in sheep. The design problem is to find 10 near optimal plasma sampling times which produce precise estimates of pharmacokinetic model parameters/measures of interest. We consider several different utility functions of interest in these studies, which involve the posterior distribution of parameter functions.

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Citations
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Journal ArticleDOI

A Review of Modern Computational Algorithms for Bayesian Optimal Design

TL;DR: A general overview on the concepts involved in Bayesian experimental design can be found in this article, where some of the more commonly used Bayesian utility functions and methods for their estimation, as well as a number of algorithms that are used to search over the design space to find the Bayesian optimal design.
Journal ArticleDOI

Optimum experimental designs

W. Näther
- 01 Dec 1994 - 
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Bridging the gap between theory and practice in basic statistical process monitoring

TL;DR: Among other issues, it is argued that the collection and use of baseline data in Phase I needs a greater emphasis and the use of sample ranges in practice to estimate process standard deviations deserves reconsideration.
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Towards Bayesian experimental design for nonlinear models that require a large number of sampling times

TL;DR: A simulation-based approach that can be used to solve optimal design problems in which one is interested in finding a large number of (near) optimal design points for a small number of design variables is presented.
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Bayesian information in an experiment and the Fisher information distance

TL;DR: There are two forms of Fisher information; for the parameter of a model and for the information in a density model; these two forms are shown to be fundamentally connected through a measure of gain in information from a Bayesian experiment.
References
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BookDOI

Sequential Monte Carlo methods in practice

TL;DR: This book presents the first comprehensive treatment of Monte Carlo techniques, including convergence results and applications to tracking, guidance, automated target recognition, aircraft navigation, robot navigation, econometrics, financial modeling, neural networks, optimal control, optimal filtering, communications, reinforcement learning, signal enhancement, model averaging and selection.
Posted Content

On Information and Sufficiency

TL;DR: The information deviation between any two finite measures cannot be increased by any statistical operations (Markov morphisms) and is invarient if and only if the morphism is sufficient for these two measures as mentioned in this paper.
Book

Simulated Annealing: Theory and Applications

TL;DR: Performance of the simulated annealing algorithm and the relation with statistical physics and asymptotic convergence results are presented.
Journal ArticleDOI

Bayesian Experimental Design: A Review

TL;DR: This paper reviews the literature on Bayesian experimental design, both for linear and nonlinear models, and presents a uniied view of the topic by putting experimental design in a decision theoretic framework.
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