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Journal ArticleDOI

Modeling of overflow metabolism in batch and fed-batch cultures of Escherichia coli.

TLDR
A dynamic model of glucose overflow metabolism in batch and fed‐batch cultivations of Escherichia coli W3110 under fully aerobic conditions is presented and acetate inhibited the specific growth rate according to a noncompetitive model.
Abstract
A dynamic model of glucose overflow metabolism in batch and fed-batch cultivations of Escherichia coli W3110 under fully aerobic conditions is presented. Simulation based on the model describes cell growth, respiration, and acetate formation as well as acetate reconsumption during batch cultures, the transition of batch to fed-batch culture, and fed-batch cultures. E. coli excreted acetate only when specific glucose uptake exceeded a critical rate corresponding to a maximum respiration rate. In batch cultures where the glucose uptake was unlimited, the overflow acetate made up to 9. 0 +/- 1.0% carbon/carbon of the glucose consumed. The applicability of the model to dynamic situations was tested by challenging the model with glucose and acetate pulses added during the fed-batch part of the cultures. In the presence of a glucose feed, E. coli utilized acetate 3 times faster than in the absence of glucose. The cells showed no significant difference in maximum specific uptake rate of endogenous acetate produced by glucose overflow and exogenous acetate added to the culture, the value being 0.12-0.18 g g-1 h-1 during the entire fed-batch culture period. Acetate inhibited the specific growth rate according to a noncompetitive model, with the inhibition constant (ki) being 9 g of acetate/L. This was due to the reduced rate of glucose uptake rather than the reduced yield of biomass.

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Journal ArticleDOI

Aerobic Glycolysis: Meeting the Metabolic Requirements of Cell Proliferation

TL;DR: In this paper, the authors provide a detailed accounting of the biosynthetic requirements to construct a new cell and illustrate the importance of glycolysis in providing carbons to generate biomass.
Journal ArticleDOI

The acetate switch.

TL;DR: Evidence is presented that nucleoid proteins orchestrate a progression of distinct nucleoprotein complexes to ensure proper transcription of its gene and that acetyl∼P influences cellular processes from organelle biogenesis to cell cycle regulation and from biofilm development to pathogenesis.
Journal ArticleDOI

Environmental and stoichiometric controls on microbial carbon‐use efficiency in soils

TL;DR: Theoretical considerations and empirical evidence indicate that CUE decreases as temperature increases and nutrient availability decreases, and current biogeochemical models could be improved by accounting for these CUE responses along environmental and stoichiometric gradients.
Journal ArticleDOI

Systematic evaluation of objective functions for predicting intracellular fluxes in Escherichia coli

TL;DR: This work systematically evaluates the capacity of 11 objective functions combined with eight adjustable constraints to predict 13C‐determined in vivo fluxes in Escherichia coli under six environmental conditions and identified two sets of objectives for biologically meaningful predictions without the need for further, potentially artificial constraints.
Journal ArticleDOI

Industrial production of amino acids by coryneform bacteria.

TL;DR: The growing market for amino acids produced with Corynebacteria led to significant improvements in bioprocess and downstream technology as well as in molecular biology, and one focus of this review is on recent developments in downstream technology.
References
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Journal ArticleDOI

Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild-type Escherichia coli W3110.

TL;DR: A predictive algorithm is formulated in order to apply the flux balance model to describe unsteady-state growth and by-product secretion in aerobic batch, fed-batch, and anaerobic batch cultures.
Journal ArticleDOI

High cell-density culture of Escherichia coli

TL;DR: The problems encountered in HCDC of E. coli are reviewed, various solutions are discussed, and feeding strategies for HCDC are described.
Journal ArticleDOI

Comparison of growth, acetate production, and acetate inhibition of Escherichia coli strains in batch and fed-batch fermentations.

TL;DR: The growth characteristics and acetate production of several Escherichia coli strains were compared by using shake flasks, batch fermentations, and glucose-feedback-controlled fed-batch fermentations to assess the potential of each strain to grow at high cell densities and indicated that the growth of the E. coli strains was likely to be inhibited by the acetate they produced when grown on media containing glucose.
Journal ArticleDOI

Growth of Saccharomyces cerevisiae is controlled by its limited respiratory capacity: Formulation and verification of a hypothesis

TL;DR: A novel mechanistic model for the growth of baker's yeast on glucose based on the fact that glucose degradation proceeds via two pathways under conditions of aerobic ethanol formation allows the prediction of experimental data without parameter adaption in a biologically dubious manner.
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