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Preferential utilization of petroleum oil hydrocarbon components by microbial consortia reflects degradation pattern in aliphatic–aromatic hydrocarbon binary mixtures

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TLDR
In this article, the abilities of two microbial consortia (Y and F) to degrade aliphatic-aromatic hydrocarbon mixtures were investigated, and it was shown that the Y consortium degraded p-xylene more rapidly than n-octane.
Abstract
In this study, the abilities of two microbial consortia (Y and F) to degrade aliphatic–aromatic hydrocarbon mixtures were investigated. Y consortium preferentially degraded the aromatic hydrocarbon fractions in kerosene, while F consortium preferentially degraded the aliphatic hydrocarbon fractions. Degradation experiments were performed under aerobic conditions in sealed bottles containing liquid medium and n-octane or n-decane as representative aliphatic hydrocarbons or toluene, ethylbenzene or p-xylene as representative aromatic hydrocarbons (all at 100 mg/l). Results demonstrated that the Y consortium degraded p-xylene more rapidly than n-octane. It degraded toluene, ethylbenzene and p-xylene more rapidly than decane. In comparison, the F consortium degraded n-octane more rapidly than toluene, ethylbenzene or p-xylene, and n-decane more rapidly than toluene, ethylbenzene or p-xylene. 16S rRNA gene sequencing revealed that the Y consortium was dominated by Betaproteobacteria and the F consortium by Gammaproteobacteria, and in particular Pseudomonas. This could account for their metabolic differences. The substrate preferences of the two consortia showed that the aliphatic–aromatic hydrocarbon binary mixtures, especially the n-decane–toluene/ethylbenzene/p-xylene pairs, reflected their degradation ability of complex hydrocarbon compounds such as kerosene. This suggests that aliphatic–aromatic binary systems could be used as a tool to rapidly determine the degradation preferences of a microbial consortium.

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Citations
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Hydrocarbon degradation and response of seafloor sediment bacterial community in the northern Gulf of Mexico to light Louisiana sweet crude oil.

TL;DR: Investigating the oil degradation potential and changes in bacterial community by amending seafloor sediment collected near the DWH site with crude oil and both oil and Corexit dispersant suggests that the hydrocarbons were biodegraded, and that the indigenous microflora have a remarkable potential for the natural attenuation of spilled oil in the deep-sea surface sediment.
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PHT3D: A Reactive Multicomponent Transport Model for Saturated Porous Media

TL;DR: a reactive multicomponent model that couples the geochemical with three-dimensional groundwater and transport simulators MODFLOW-2000 to solve the challenge of integrating non-volatile materials into an integrated system.
Journal ArticleDOI

Bacterial community dynamics during the preferential degradation of aromatic hydrocarbons by a microbial consortium

TL;DR: This work provided an alternative way to explain the contribution of different microbial species in the degradation of hydrocarbon fractions and showed that the remarkable increase of Burkholderia spp.
Journal ArticleDOI

Natural sunlight shapes crude oil-degrading bacterial communities in northern Gulf of Mexico surface waters

TL;DR: In this article, the effects of light in structuring microbial communities in water with oil and/or Corexit were investigated in the Gulf of Mexico following the 2010 Deepwater Horizon (DWH) spill.
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Comparison of indigenous and exogenous microbial populations during slurry phase biodegradation of long-term hydrocarbon-contaminated soil

TL;DR: The addition of activated sludge and nutrients to slurries (bioaugmentation) resulted in enhanced hydrocarbon removal compared to treatments receiving only nutrients (enhanced natural attenuation [ENA]; 41.3 ± 6.4 %) and this data suggests that the microbial community in theactivated sludge inoculum contributed to the enhanced removal of hydrocarbons in ENA slurries.
References
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Journal ArticleDOI

New screening software shows that most recent large 16S rRNA gene clone libraries contain chimeras.

TL;DR: A new computer program, called Mallard, is presented for screening entire 16S rRNA gene libraries of up to 1,000 sequences for chimeras and other artifacts, which far exceed previous estimates of artifacts within public repositories and highlight the urgent need for all researchers to adequately screen their libraries prior to submission.
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Biodegradation of hydrocarbons in soil by microbial consortium

TL;DR: Bacterial strains used in this study were from the Center for Research in Enzymes and Microbiology (CREAM) collection of strains, at Universiti Putra Malaysia, and were isolated from hydrocarbon-contaminated soil samples by enrichments on either crude oil or individual hydrocarbons as the sole carbon source.
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Biodegradation of petroleum hydrocarbons by psychrotrophic Pseudomonas strains possessing both alkane (alk) and naphthalene (nah) catabolic pathways.

TL;DR: Three hydrocarbon-degrading psychrotrophic bacteria were isolated from petroleum-contaminated Arctic soils and characterized, demonstrating that both catabolic pathways, located on separate plasmids, can naturally coexist in the same bacterium.
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Microbial Activity and Community Composition during Bioremediation of Diesel-Oil-Contaminated Soil: Effects of Hydrocarbon Concentration, Fertilizers, and Incubation Time

TL;DR: Microbial communities, as assessed by PLFA patterns, were primarily influenced by the TPH content, followed by fertilization, and the interaction of these two factors, whereas incubation time was of minor importance, demonstrated by three-factorial analysis of variance and multidimensional scaling analysis.
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Development of a real-time PCR method for quantification of the three genera Dehalobacter, Dehalococcoides, and Desulfitobacterium in microbial communities.

TL;DR: Determination of the fractional numbers in DNA mixtures of known composition showed the accuracy of the standard curves developed, and indicated that the low amplification efficiency of certain standard curves seemed to be mainly a problem of the plasmid DNA used and not of the 16S rRNA gene of the target genera.
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