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Small-angle X-ray scattering: characterization of cubic Au nanoparticles using Debye's scattering formula

- 15 Jul 2022 - 
- Vol. 55, Iss: 4, pp 993-1001
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TLDR
In this article , a software package in the form of a Python extension, named CDEF, is proposed to calculate approximate scattering profiles of arbitrarily shaped nanoparticles for small-angle X-ray scattering (SAXS).
Abstract
A versatile software package in the form of a Python extension, named CDEF (computing Debye's scattering formula for extraordinary form factors), is proposed to calculate approximate scattering profiles of arbitrarily shaped nanoparticles for small-angle X-ray scattering (SAXS). CDEF generates a quasi-randomly distributed point cloud in the desired particle shape and then applies the open-source software DEBYER for efficient evaluation of Debye's scattering formula to calculate the SAXS pattern (https://github.com/j-from-b/CDEF). If self-correlation of the scattering signal is not omitted, the quasi-random distribution provides faster convergence compared with a true-random distribution of the scatterers, especially at higher momentum transfer. The usage of the software is demonstrated for the evaluation of scattering data of Au nanocubes with rounded edges, which were measured at the four-crystal monochromator beamline of PTB at the synchrotron radiation facility BESSY II in Berlin. The implementation is fast enough to run on a single desktop computer and perform model fits within minutes. The accuracy of the method was analyzed by comparison with analytically known form factors and verified with another implementation, the SPONGE , based on a similar principle with fewer approximations. Additionally, the SPONGE coupled to McSAS3 allows one to retrieve information on the uncertainty of the size distribution using a Monte Carlo uncertainty estimation algorithm.

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Journal ArticleDOI

Metrological Protocols for Reaching Reliable and SI-Traceable Size Results for Multi-Modal and Complexly Shaped Reference Nanoparticles

TL;DR: In this article , a comparison of the performance of different microscopy-based techniques applied to complexly shaped nanoparticles is presented, showing good consistency of the measured size by different techniques in cases where special care was taken for sample preparation, instrument calibration, and the clear definition of the measurand.
Journal ArticleDOI

Quantification of PEFC Catalyst Layer Saturation via In Silico, Ex Situ, and In Situ Small-Angle X-ray Scattering

TL;DR: In this paper , a method to quantify the presence of liquid water in a PEFC catalyst layer using small-angle X-ray scattering (SAXS) was proposed, which leverages the differences in electron densities between the solid catalyst matrix and the liquid water filled pores of the PEFC layers under both dry and wet conditions.
Posted Content

Shape2SAS -- a web application to simulate small-angle scattering data and pair distance distributions from user-defined shapes.

TL;DR: Shape2SAS as mentioned in this paper is a web application that allows researchers and students to build intuition and understanding of small-angle scattering, and it can calculate and display the different scattering patterns for various geometrical shapes, such as spheres and cylinders.
References
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Journal ArticleDOI

SciPy 1.0--Fundamental Algorithms for Scientific Computing in Python

TL;DR: SciPy as discussed by the authors is an open source scientific computing library for the Python programming language, which includes functionality spanning clustering, Fourier transforms, integration, interpolation, file I/O, linear algebra, image processing, orthogonal distance regression, minimization algorithms, signal processing, sparse matrix handling, computational geometry, and statistics.
Journal ArticleDOI

CRYSOL : a program to evaluate X-ray solution scattering of biological macromolecules from atomic coordinates

TL;DR: In this paper, a program for evaluating the solution scattering from macromolecules with known atomic structure is presented, which uses multipole expansion for fast calculation of the spherically averaged scattering pattern and takes into account the hydration shell.
Journal ArticleDOI

Restoring low resolution structure of biological macromolecules from solution scattering using simulated annealing.

TL;DR: Application of the method is illustrated by the restoration of a ribosome-like model structure and more realistically by the determination of the shape of several proteins from experimental x-ray scattering data.
Journal ArticleDOI

Atomic Radii and Interatomic Distances in Metals

TL;DR: In this article, it was shown that the number of covalent bonds resonating among the available positions about an atom (the metallic valence of the atom) increases from one to nearly six (5.78) in the sequence K, Ca, Sc, Ti, V, Cr in the first long period of the periodic table, remains nearly constant from Cr to Ni, and begins to decrease with Cu.
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