Statsmodels: Econometric and Statistical Modeling with Python
Skipper Seabold,Josef Perktold +1 more
- pp 92-96
TLDR
The current relationship between statistics and Python and open source more generally is discussed, outlining how the statsmodels package fills a gap in this relationship.Abstract:
Statsmodels is a library for statistical and econometric analysis in Python. This paper discusses the current relationship between statistics and Python and open source more generally, outlining how the statsmodels package fills a gap in this relationship. An overview of statsmodels is provided, including a discussion of the overarching design and philosophy, what can be found in the package, and some usage examples. The paper concludes with a look at what the future holds.read more
Citations
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Journal ArticleDOI
SciPy 1.0--Fundamental Algorithms for Scientific Computing in Python
Pauli Virtanen,Ralf Gommers,Travis E. Oliphant,Matt Haberland,Matt Haberland,Tyler Reddy,David Cournapeau,Evgeni Burovski,Pearu Peterson,Warren Weckesser,Jonathan Bright,Stefan van der Walt,Matthew Brett,Joshua Wilson,K. Jarrod Millman,Nikolay Mayorov,Andrew Nelson,Eric Jones,Robert Kern,Eric B. Larson,CJ Carey,Ilhan Polat,Yu Feng,Eric Moore,Jake Vanderplas,Denis Laxalde,Josef Perktold,Robert Cimrman,Ian Henriksen,Ian Henriksen,E. A. Quintero,Charles R. Harris,Anne M. Archibald,Antônio H. Ribeiro,Fabian Pedregosa,Paul van Mulbregt,SciPy . Contributors +36 more
TL;DR: SciPy as discussed by the authors is an open source scientific computing library for the Python programming language, which includes functionality spanning clustering, Fourier transforms, integration, interpolation, file I/O, linear algebra, image processing, orthogonal distance regression, minimization algorithms, signal processing, sparse matrix handling, computational geometry, and statistics.
Journal ArticleDOI
SciPy 1.0: fundamental algorithms for scientific computing in Python.
Pauli Virtanen,Ralf Gommers,Travis E. Oliphant,Matt Haberland,Matt Haberland,Tyler Reddy,David Cournapeau,Evgeni Burovski,Pearu Peterson,Warren Weckesser,Jonathan Bright,Stefan van der Walt,Matthew Brett,Joshua Wilson,K. Jarrod Millman,Nikolay Mayorov,Andrew Nelson,Eric Jones,Robert Kern,Eric B. Larson,CJ Carey,Ilhan Polat,Yu Feng,Eric Moore,Jake Vanderplas,Denis Laxalde,Josef Perktold,Robert Cimrman,Ian Henriksen,Ian Henriksen,E. A. Quintero,Charles R. Harris,Anne M. Archibald,Antônio H. Ribeiro,Fabian Pedregosa,Paul van Mulbregt,SciPy . Contributors +36 more
TL;DR: SciPy as discussed by the authors is an open-source scientific computing library for the Python programming language, which has become a de facto standard for leveraging scientific algorithms in Python, with over 600 unique code contributors, thousands of dependent packages, over 100,000 dependent repositories and millions of downloads per year.
Journal ArticleDOI
SCANPY: large-scale single-cell gene expression data analysis
TL;DR: This work presents Scanpy, a scalable toolkit for analyzing single-cell gene expression data that includes methods for preprocessing, visualization, clustering, pseudotime and trajectory inference, differential expression testing, and simulation of gene regulatory networks, and AnnData, a generic class for handling annotated data matrices.
Journal ArticleDOI
Molecular Graph Convolutions: Moving Beyond Fingerprints
TL;DR: Molecular graph convolutions are described, a machine learning architecture for learning from undirected graphs, specifically small molecules, that represent a new paradigm in ligand-based virtual screening with exciting opportunities for future improvement.
Journal ArticleDOI
Molecular graph convolutions: moving beyond fingerprints
TL;DR: In this article, molecular graph convolutions, a machine learning architecture for learning from undirected graphs, specifically small molecules, are described. But they do not outperform all fingerprint-based methods, and they represent a new paradigm in ligand-based virtual screening with exciting opportunities for future improvement.
References
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