A
Allen G. Rodrigo
Researcher at Australian National University
Publications - 128
Citations - 9850
Allen G. Rodrigo is an academic researcher from Australian National University. The author has contributed to research in topics: Population & Virus. The author has an hindex of 42, co-authored 127 publications receiving 9436 citations. Previous affiliations of Allen G. Rodrigo include National Evolutionary Synthesis Center & Stanford University.
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Journal ArticleDOI
Likelihood-Based Tests of Topologies in Phylogenetics
TL;DR: The theory of the Kishino-Hasegawa test is reviewed and it is argued that for the majority of popular applications this test should not be used, and future applications should use appropriate alternative tests instead.
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Estimating Mutation Parameters, Population History and Genealogy Simultaneously From Temporally Spaced Sequence Data
TL;DR: A Bayesian statistical inference approach to the joint estimation of mutation rate and population size that incorporates the uncertainty in the genealogy of such temporally spaced sequences by using Markov chain Monte Carlo (MCMC) integration.
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Consistent viral evolutionary changes associated with the progression of human immunodeficiency virus type 1 infection
Raj Shankarappa,Joseph B. Margolick,Stephen J. Gange,Allen G. Rodrigo,David Upchurch,Homayoon Farzadegan,Phalguni Gupta,Charles R. Rinaldo,Gerald H. Learn,Xi C. He,Xiao Li Huang,James I. Mullins +11 more
TL;DR: In this article, the authors studied the evolution of the C2-V5 region of the HIV-1 env gene and of T-cell subsets in nine men with a moderate or slow rate of disease progression.
Journal ArticleDOI
Time-dependent rates of molecular evolution.
Simon Y. W. Ho,Robert Lanfear,Lindell Bromham,Matthew J. Phillips,Julien Soubrier,Allen G. Rodrigo,Allen G. Rodrigo,Alan Cooper +7 more
TL;DR: An overview of the current understanding of time-dependent rates in animals, bacteria and viruses is presented and the challenges in calibrating estimates of molecular rates are described, particularly on the intermediate timescales that are critical for an accurate characterization of time‐dependent rates.
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Assessing the complex sponge microbiota: core, variable and species-specific bacterial communities in marine sponges.
Susanne Schmitt,Peter Tsai,James J. Bell,Jane Fromont,Micha Ilan,Niels Lindquist,Thierry Perez,Allen G. Rodrigo,Allen G. Rodrigo,Peter J. Schupp,Peter J. Schupp,Jean Vacelet,Nicole S. Webster,Ute Hentschel,Michael W. Taylor +14 more
TL;DR: This global analysis represents the most comprehensive study of bacterial symbionts in sponges to date and provides novel insights into the complex structure of these unique associations.