C
Carson M. Andorf
Researcher at Iowa State University
Publications - 51
Citations - 1909
Carson M. Andorf is an academic researcher from Iowa State University. The author has contributed to research in topics: Genome & Annotation. The author has an hindex of 21, co-authored 44 publications receiving 1317 citations. Previous affiliations of Carson M. Andorf include Agricultural Research Service & United States Department of Agriculture.
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Journal ArticleDOI
MaizeGDB 2018: the maize multi-genome genetics and genomics database
John L. Portwood,Margaret R. Woodhouse,Ethalinda K. S. Cannon,Jack M. Gardiner,Lisa C. Harper,Mary L. Schaeffer,Jesse R. Walsh,Taner Z. Sen,Taner Z. Sen,Kyoung Tak Cho,David A. Schott,Bremen L. Braun,Miranda Dietze,Brittney Dunfee,Christine G. Elsik,Nancy Manchanda,Edward H. Coe,Martin M. Sachs,Philip S. Stinard,Josh Tolbert,Shane Zimmerman,Carson M. Andorf +21 more
TL;DR: The changes MaizeGDB has made within the last three years are reported to keep pace with recent software and research advances, as well as the pan-genomic landscape that cheaper and better sequencing technologies have made possible.
Journal ArticleDOI
De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes
Matthew B. Hufford,Arun S. Seetharam,Margaret R. Woodhouse,Kapeel Chougule,Shujun Ou,Jianing Liu,William A. Ricci,Tingting Guo,Andrew Olson,Yinjie Qiu,Rafael Della Coletta,Silas Tittes,Asher I. Hudson,Alexandre P. Marand,Sharon Wei,Zhenyuan Lu,Bo Wang,Marcela K. Tello-Ruiz,Rebecca D. Piri,Na Wang,Dong Won Kim,Yibing Zeng,Christine H. O’Connor,Xianran Li,Amanda M. Gilbert,Erin Baggs,Ksenia V. Krasileva,John L. Portwood,Ethalinda K. S. Cannon,Carson M. Andorf,Nancy Manchanda,Samantha J. Snodgrass,David E. Hufnagel,David E. Hufnagel,Qiuhan Jiang,Sarah Pedersen,Michael Syring,David Kudrna,Victor Llaca,Kevin Fengler,Robert J. Schmitz,Jeffrey Ross-Ibarra,Jianming Yu,Jonathan I. Gent,Candice N. Hirsch,Doreen Ware,Doreen Ware,R. Kelly Dawe +47 more
TL;DR: In this article, de novo genome assemblies, transcriptomes, annotations, and methylomes for the 26 inbreds that serve as the founders for the maize nested association mapping population were reported.
Journal ArticleDOI
The maize W22 genome provides a foundation for functional genomics and transposon biology
Nathan M. Springer,Sarah N. Anderson,Carson M. Andorf,Kevin R. Ahern,Fang Bai,Omer Barad,W. Brad Barbazuk,Hank W. Bass,Kobi Baruch,Gil Ben-Zvi,Edward S. Buckler,Edward S. Buckler,Robert Bukowski,Michael S. Campbell,Ethalinda K. S. Cannon,Paul S. Chomet,R. Kelly Dawe,Ruth Davenport,Hugo K. Dooner,Limei He Du,Chunguang Du,Katherine A. Easterling,Christine M. Gault,Jiahn-Chou Guan,Charles T. Hunter,Georg Jander,Yinping Jiao,Karen E. Koch,Guy Kol,Tobias G. Köllner,Toru Kudo,Qing Li,Fei Lu,Fei Lu,Dustin Mayfield-Jones,Wenbin Mei,Donald R. McCarty,Jaclyn M. Noshay,John L. Portwood,Gil Ronen,A. Mark Settles,Doron Shem-Tov,Jinghua Shi,Ilya Soifer,Joshua C. Stein,Michelle C. Stitzer,Masaharu Suzuki,Daniel L. Vera,Erik Vollbrecht,Julia Vrebalov,Doreen Ware,Doreen Ware,Doreen Ware,Sharon Wei,Kokulapalan Wimalanathan,Margaret R. Woodhouse,Wenwei Xiong,Thomas P. Brutnell,Thomas P. Brutnell +58 more
TL;DR: It is shown that significant structural heterogeneity exists in comparison to the B73 reference genome at multiple scales, from transposon composition and copy number variation to single-nucleotide polymorphisms.
Journal ArticleDOI
MaizeGDB update: new tools, data and interface for the maize model organism database
Carson M. Andorf,Ethalinda K. S. Cannon,John L. Portwood,Jack M. Gardiner,Jack M. Gardiner,Lisa C. Harper,Mary L. Schaeffer,Bremen L. Braun,Darwin A. Campbell,Abhinav G. Vinnakota,Venktanaga V. Sribalusu,Miranda Huerta,Kyoung Tak Cho,Kokulapalan Wimalanathan,Jacqueline D. Richter,Emily D. Mauch,Bhavani Satyanarayana Rao,Scott M. Birkett,Taner Z. Sen,Carolyn J. Lawrence-Dill +19 more
TL;DR: A multi-year effort to update the MaizeGDB resource by reorganizing existing data, upgrading hardware and infrastructure, creating new tools, incorporating new data types (including diversity data, expression data, gene models, and metabolic pathways), and developing and deploying a modern interface.
Journal ArticleDOI
The Locus Lookup tool at MaizeGDB
Carson M. Andorf,Carolyn J. Lawrence,Lisa Harper,Mary L. Schaeffer,Darwin A. Campbell,Taner Z. Sen +5 more
TL;DR: The Locus Lookup tool enables researchers to define windows of genomic sequence likely to contain loci of interest where only genetic or physical mapping associations are reported.