M
Michael S. Campbell
Researcher at University of Utah
Publications - 37
Citations - 6054
Michael S. Campbell is an academic researcher from University of Utah. The author has contributed to research in topics: Genome & Genomics. The author has an hindex of 20, co-authored 37 publications receiving 4794 citations. Previous affiliations of Michael S. Campbell include Cold Spring Harbor Laboratory.
Papers
More filters
Journal ArticleDOI
Improved maize reference genome with single-molecule technologies
Yinping Jiao,Paul Peluso,Jinghua Shi,Tiffany Y. Liang,Michelle C. Stitzer,Bo Wang,Michael S. Campbell,Joshua C. Stein,Xuehong Wei,Chen-Shan Chin,Katherine E. Guill,Michael Regulski,Sunita Kumari,Andrew Olson,Jonathan I. Gent,Kevin L. Schneider,Thomas K. Wolfgruber,Michael R. May,Nathan M. Springer,Eric Antoniou,W. Richard McCombie,Gernot G. Presting,Michael D. McMullen,Jeffrey Ross-Ibarra,R. Kelly Dawe,Alex Hastie,David R. Rank,Doreen Ware,Doreen Ware +28 more
TL;DR: The assembly and annotation of a reference genome of maize is reported, using single-molecule real-time sequencing and high-resolution optical mapping to identify transposable element lineage expansions that are unique to maize.
Journal ArticleDOI
The African coelacanth genome provides insights into tetrapod evolution
Chris T. Amemiya,Chris T. Amemiya,Jessica Alföldi,Alison P. Lee,Shaohua Fan,Hervé Philippe,Iain MacCallum,Ingo Braasch,Tereza Manousaki,Igor Schneider,Nicolas Rohner,Chris L. Organ,Domitille Chalopin,J. Joshua Smith,Mark Robinson,Rosemary A. Dorrington,Marco Gerdol,Bronwen Aken,Maria Assunta Biscotti,Marco Barucca,Denis Baurain,Aaron M. Berlin,Gregory L. Blatch,Gregory L. Blatch,Francesco Buonocore,Thorsten Burmester,Michael S. Campbell,Adriana Canapa,John P. Cannon,Alan Christoffels,Gianluca De Moro,Adrienne L. Edkins,Lin Fan,Anna Maria Fausto,Nathalie Feiner,Mariko Forconi,Junaid Gamieldien,Sante Gnerre,Andreas Gnirke,Jared V. Goldstone,Wilfried Haerty,Mark E. Hahn,Uljana Hesse,Steve Hoffmann,Jeremy Johnson,Sibel I. Karchner,Shigehiro Kuraku,Marcia Lara,Joshua Z. Levin,Gary W. Litman,Evan Mauceli,Evan Mauceli,Tsutomu Miyake,M. Gail Mueller,David R. Nelson,Anne Nitsche,Ettore Olmo,Tatsuya Ota,Alberto Pallavicini,Sumir Panji,Barbara Picone,Chris P. Ponting,Sonja J. Prohaska,Dariusz Przybylski,Nil Ratan Saha,Vydianathan Ravi,Filipe J. Ribeiro,Tatjana Sauka-Spengler,Giuseppe Scapigliati,Stephen M. J. Searle,Ted Sharpe,Oleg Simakov,Peter F. Stadler,John J. Stegeman,Kenta Sumiyama,Diana Tabbaa,Hakim Tafer,Jason Turner-Maier,Peter van Heusden,Simon D. M. White,Louise Williams,Mark Yandell,Henner Brinkmann,Jean Nicolas Volff,Clifford J. Tabin,Neil H. Shubin,Manfred Schartl,David B. Jaffe,John H. Postlethwait,Byrappa Venkatesh,Federica Di Palma,Eric S. Lander,Axel Meyer,Kerstin Lindblad-Toh,Kerstin Lindblad-Toh +94 more
TL;DR: Through a phylogenomic analysis, it is concluded that the lungfish, and not the coelacanth, is the closest living relative of tetrapods.
Journal ArticleDOI
Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution
J. Joshua Smith,Shigehiro Kuraku,Carson Holt,Tatjana Sauka-Spengler,Ning Jiang,Michael S. Campbell,Mark Yandell,Tereza Manousaki,Axel Meyer,Ona Bloom,Ona Bloom,Jennifer R. Morgan,Joseph D. Buxbaum,Ravi Sachidanandam,Carrie Sims,Alexander S. Garruss,Malcolm Cook,Robb Krumlauf,Leanne M. Wiedemann,Stacia A. Sower,Wayne A. Decatur,Jeffrey A. Hall,Chris T. Amemiya,Nil Ratan Saha,Katherine M. Buckley,Jonathan P. Rast,Sabyasachi Das,Masayuki Hirano,Nathanael McCurley,Peng Guo,Nicolas Rohner,Clifford J. Tabin,Paul Piccinelli,Greg Elgar,Magali Ruffier,Bronwen Aken,Stephen M. J. Searle,Matthieu Muffato,Miguel Pignatelli,Javier Herrero,Matthew Jones,C. Titus Brown,Yu Wen Chung-Davidson,Kaben G. Nanlohy,Scot V. Libants,Chu Yin Yeh,David W. McCauley,James A. Langeland,Zeev Pancer,Bernd Fritzsch,Pieter J. de Jong,Baoli Zhu,Lucinda Fulton,Brenda Theising,Paul Flicek,Marianne E. Bronner,Wesley C. Warren,Sandra W. Clifton,Richard K. Wilson,Weiming Li +59 more
TL;DR: Analyses of the assembly indicate that two whole-genome duplications likely occurred before the divergence of ancestral lamprey and gnathostome lineages, and help define key evolutionary events within vertebrate lineages.
Journal ArticleDOI
The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons
Ingo Braasch,Andrew R. Gehrke,J. Joshua Smith,Kazuhiko Kawasaki,Tereza Manousaki,Jeremy Pasquier,Angel Amores,Thomas Desvignes,Peter Batzel,Julian M. Catchen,Aaron M. Berlin,Michael S. Campbell,Daniel Barrell,Daniel Barrell,Kyle J. Martin,John F Mulley,Vydianathan Ravi,Alison P. Lee,Tetsuya Nakamura,Domitille Chalopin,Shaohua Fan,Dustin J. Wcisel,Cristian Cañestro,Jason Sydes,Felix E.G. Beaudry,Yi Sun,Jana Hertel,Michael J. Beam,Mario Fasold,Mikio Ishiyama,Jeremy Johnson,Steffi Kehr,Marcia Lara,John H. Letaw,Gary W. Litman,Ronda T. Litman,Masato Mikami,Tatsuya Ota,Nil Ratan Saha,Louise Williams,Peter F. Stadler,Han Wang,John S. Taylor,Quenton C. Fontenot,Allyse M. Ferrara,Stephen M. J. Searle,Bronwen Aken,Bronwen Aken,Mark Yandell,Igor Schneider,Jeffrey A. Yoder,Jean-Nicolas Volff,Axel Meyer,Chris T. Amemiya,Byrappa Venkatesh,Peter W. H. Holland,Yann Guiguen,Julien Bobe,Neil H. Shubin,Federica Di Palma,Jessica Alföldi,Kerstin Lindblad-Toh,Kerstin Lindblad-Toh,John H. Postlethwait +63 more
TL;DR: In this article, the authors sequenced the genome of spotted gar (Lepisosteus oculatus), whose lineage diverged from teleosts before teleost genome duplication (TGD).
Journal ArticleDOI
Genome Annotation and Curation Using MAKER and MAKER-P
TL;DR: This unit describes how to use the genome annotation and curation tools MAKER and MAKER‐P to annotate protein‐coding and noncoding RNA genes in newly assembled genomes, update/combine legacy annotations in light of new evidence, add quality metrics to annotations from other pipelines, and map existing annotations to a new assembly.