D
Daniel G. MacArthur
Researcher at Broad Institute
Publications - 281
Citations - 73196
Daniel G. MacArthur is an academic researcher from Broad Institute. The author has contributed to research in topics: Population & Exome sequencing. The author has an hindex of 80, co-authored 265 publications receiving 54145 citations. Previous affiliations of Daniel G. MacArthur include Harvard University & Massachusetts Institute of Technology.
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New synthetic-diploid benchmark for accurate variant calling evaluation
Heng Li,Jonathan M. Bloom,Yossi Farjoun,Mark Fleharty,Laura D. Gauthier,Benjamin M. Neale,Benjamin M. Neale,Daniel G. MacArthur,Daniel G. MacArthur +8 more
TL;DR: A new benchmark dataset is derived from the de novo PacBio assemblies of two human cell lines that are homozygous across the whole genome that provides a more accurate and less biased estimate of the error rate of small variant calls in a realistic context.
Posted ContentDOI
Leveraging supervised learning for functionally-informed fine-mapping of cis-eQTLs identifies an additional 20,913 putative causal eQTLs
Qingbo Wang,Qingbo Wang,David R. Kelley,Jacob C. Ulirsch,Jacob C. Ulirsch,Masahiro Kanai,Shuvom Sadhuka,Shuvom Sadhuka,Ran Cui,Ran Cui,Carlos Albors,Carlos Albors,Nathan Cheng,Nathan Cheng,Yukinori Okada,François Aguet,Kristin G. Ardlie,Daniel G. MacArthur,Hilary K. Finucane,Hilary K. Finucane +19 more
TL;DR: The expression modifier score (EMS) is presented, a predicted probability that a variant has a cis-regulatory effect on gene expression, trained on fine-mapped eQTLs and leveraging 6,121 features including epigenetic marks and sequence-based neural network predictions.
Journal ArticleDOI
Whole exome sequencing identifies three recessive FIG4 mutations in an apparently dominant pedigree with Charcot–Marie–Tooth disease
Manoj P. Menezes,Manoj P. Menezes,Leigh B. Waddell,Leigh B. Waddell,Guy M. Lenk,Simranpreet Kaur,Daniel G. MacArthur,Miriam H. Meisler,Nigel F. Clarke,Nigel F. Clarke +9 more
TL;DR: This study is a cautionary reminder that in families with two generations affected, explanations other than dominant inheritance are possible, such as recessive inheritance due to three mutations segregating in the family, and emphasises the advantages of next-generation sequencing approaches that screen multiple CMT genes at once for patients in whom the common genes have been excluded.
Journal ArticleDOI
A novel recessive TTN founder variant is a common cause of distal myopathy in the Serbian population
Stojan Peric,JN Glumac,Ana Töpf,Dusanka Savic-Pavicevic,L. Phillips,Katherine Johnson,M. Cassop-Thompson,L. Xu,Marta Bertoli,Monkol Lek,Monkol Lek,Daniel G. MacArthur,Daniel G. MacArthur,Miloš Brkušanin,S Milenkovic,Vedrana Milic Rasic,Bojan Banko,Ruzica Maksimovic,Hanns Lochmüller,Vidosava Rakocevic Stojanovic,Straub +20 more
TL;DR: A distinct phenotype is described for patients with distal myopathy associated with novel recessive TTN variants including a Serbian founder variant, which will facilitate the diagnosis of this condition in patients of Serbian origin.
Posted ContentDOI
Human loss-of-function variants suggest that partial LRRK2 inhibition is a safe therapeutic strategy for Parkinson’s disease
Nicola Whiffin,Nicola Whiffin,Irina M. Armean,Irina M. Armean,Aaron Kleinman,Jamie L. Marshall,Eric Vallabh Minikel,Konrad J. Karczewski,Konrad J. Karczewski,Beryl B. Cummings,Beryl B. Cummings,Laurent C. Francioli,Laurent C. Francioli,Kristen M. Laricchia,Kristen M. Laricchia,Qingbo Wang,Qingbo Wang,Anna Guan,Babak Alipanahi,Peter Morrison,Marco A. S. Baptista,Kalpana M. Merchant,James S. Ware,James S. Ware,Aki S. Havulinna,Aki S. Havulinna,Bozenna Iliadou,Jung-Jin Lee,Girish N. Nadkarni,Cole Whiteman,Mark J. Daly,Mark J. Daly,Tõnu Esko,Tõnu Esko,Christina M. Hultman,Christina M. Hultman,Ruth J. F. Loos,Lili Milani,Aarno Palotie,Aarno Palotie,Aarno Palotie,Carlos N. Pato,Michele T. Pato,Danish Saleheen,Patrick F. Sullivan,Patrick F. Sullivan,Jessica Alföldi,Jessica Alföldi,Paul Cannon,Daniel G. MacArthur,Daniel G. MacArthur +50 more
TL;DR: The results demonstrate the value of large-scale genomic databases and phenotyping of human LoF carriers for target validation in drug discovery and suggest that therapeutics that partially downregulate LRRK2 levels or kinase activity are unlikely to have major on-target safety liabilities.